View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5759_low_19 (Length: 361)
Name: NF5759_low_19
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 38821955 - 38822301
Alignment:
| Q |
1 |
tgacatcaataacaaagatttcaaaattaaaaaagccaccaaagttctatttcagtatctaagaaccatgacgtaagacaatatggataaactgttgaag |
100 |
Q |
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| T |
38821955 |
tgacatcaataacaaagattgcaaaatttaaaaagccaccaaagttctatttcagtatctaagaaccatgacgtaagacaatatggataaactgttgaag |
38822054 |
T |
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| Q |
101 |
ttcaatgtttcaccttcctacctgaagatactatcaaccatgtgatgaatttcatataa---taagattgtattataatgtcttggtcctttaatcaatt |
197 |
Q |
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| T |
38822055 |
ttcaatgtttcaccttcctacctgaagatactatcaaccacgtgatgaatttcatataataataagattgtattataatgtcttggtcctttaatcaatt |
38822154 |
T |
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| Q |
198 |
aataatcttatcgttagtacttgactaaacggaccatcagtttagacaaacaagtggcactggtaggacaaataattcttttttctatatccaaataacc |
297 |
Q |
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| T |
38822155 |
aataatcttatcgttagtacttgactaaacggaccatcagtttagacaaacaagtggcactggtaggacaaataattcttttttctatatccaaataacc |
38822254 |
T |
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| Q |
298 |
tctggatgcatgatccttctgacctcatagtctgtgtcgttagaaat |
344 |
Q |
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| T |
38822255 |
tctggatgcatgatccttctgacctcatagtctgtgtcgttagaaat |
38822301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 38809150 - 38809213
Alignment:
| Q |
229 |
gaccatcagtttagacaaacaagtggcactggtaggacaaataattcttttttctatatccaaat |
293 |
Q |
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| T |
38809150 |
gaccattagtttagacaaacaagtggcaccggtaggacaaatggtt-atttttctatatccaaat |
38809213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 342
Target Start/End: Original strand, 38809270 - 38809309
Alignment:
| Q |
303 |
atgcatgatccttctgacctcatagtctgtgtcgttagaa |
342 |
Q |
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| T |
38809270 |
atgcatgatccttctgacctcataatctgtctcgttagaa |
38809309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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