View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5759_low_21 (Length: 354)
Name: NF5759_low_21
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 40685261 - 40685507
Alignment:
| Q |
17 |
aaaattagacgagtagttctaagtggacttttagatcgtgatgcatgacagaattaatggtctacttagtatactatcatcaatttgatgatgtaggtag |
116 |
Q |
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| T |
40685261 |
aaaattagacgagtagttctaagtggacttttagatcgtgatgcatgacagaattaatggtctacttagtatactatcatcaatttgatgatataagtag |
40685360 |
T |
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| Q |
117 |
tgatattaaggatacaattgacagagaatttaggttagaaaatgagcatggaataataaaatatatttgatctgagaaatttagtgataactgaatgaag |
216 |
Q |
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| T |
40685361 |
tgatattaaggatacaattgacagagaatttatgttagaaaatgagcatggaataataaaatatatttgatctgagaaatttagtgataactgaatgaag |
40685460 |
T |
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| Q |
217 |
gacaaaatacttttttaaaaaacatcattaattagtggcagtagtaa |
263 |
Q |
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| T |
40685461 |
gacaaaatacttttttaaaaaacatcattaattagtggcagtagtaa |
40685507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 40685687 - 40685761
Alignment:
| Q |
262 |
aaaattgctctattatatgtagtgaagctatggaattgatatggtcgaagtatgctagataaacaagtggagagg |
336 |
Q |
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| T |
40685687 |
aaaattgctctattatatgtagtcaagctatggaattgatatggtcgaagtatgctagataaacaagtggagagg |
40685761 |
T |
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