View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5759_low_24 (Length: 318)
Name: NF5759_low_24
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 35071971 - 35071666
Alignment:
| Q |
18 |
agttttactcttccagctaactgtaaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaacc |
117 |
Q |
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| T |
35071971 |
agttttactcttccagctaactgtaaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaacc |
35071872 |
T |
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| Q |
118 |
ctgatcgtttgaccaatcagagttcacagtgagagtaattatgaaaag---------------ttgaaatttgaatccaaaaatgttccattttggctat |
202 |
Q |
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| T |
35071871 |
ctgatcgtttgaccaatcagagttcacagtgagagtaataatgaacagttctgttcgtgtggattgaaatttgaatccaaaaatgttccattttggctat |
35071772 |
T |
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| Q |
203 |
ttgtttttgtatgttagtgattaggaaatgctgttacaaataagaaacgtgtgtgtatcataagcattaatacgggttagataaagcacctacgtgatga |
302 |
Q |
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| T |
35071771 |
ttgtttttgtatgttagtgattaggaaatgctgttacaaataagaaacgtgtgtgtatcataagcattaatacgagttagataaagcacctacgtgttga |
35071672 |
T |
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| Q |
303 |
tgtcca |
308 |
Q |
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|||||| |
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| T |
35071671 |
tgtcca |
35071666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Original strand, 34919170 - 34919235
Alignment:
| Q |
41 |
taaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaaga |
106 |
Q |
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| T |
34919170 |
taaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga |
34919235 |
T |
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