View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5759_low_25 (Length: 311)

Name: NF5759_low_25
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5759_low_25
NF5759_low_25
[»] chr5 (1 HSPs)
chr5 (18-311)||(8071452-8071746)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 8071746 - 8071452
Alignment:
Q  18 gtgtggtcctagagtacatcctcatcaatcagttaagaagttcacagatgccaaaaaa-cactaacacttgctagaatgagctttcttacctcagaagct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8071746 gtgtggtcctagagtacatcctcatcaatcagttaagaagttcacagatgccaaaaaaacactaacacttgctagaatgagctttcttacctcagaagct 8071647  T
Q  117 gttttctcttcgtcaacattagactcagannnnnnngaacatttgtgagccccattctcaaccaactgcaattacatacacgcgacataaagttattagc 216  Q
    ||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8071646 gttttctcttcgtcaacgttagactcagatttttttgaacatttgtgagccccattctcaaccaactgcaattacatacacgcgacataaagttattagc 8071547  T
Q  217 tgaaattaaaaatagagatgcaagaagagaatagaggtaaaagagaacagtggcaggtccaaccctcagaatttcaggatctttccatgggccct 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8071546 tgaaattaaaaatagagatgcaagaagagaatagaggtaaaagagaacagtggcaggtccaaccctcagaatttcaggatctttccatgggccct 8071452  T

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