View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5759_low_3 (Length: 527)

Name: NF5759_low_3
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5759_low_3
NF5759_low_3
[»] chr3 (4 HSPs)
chr3 (18-513)||(24571740-24572235)
chr3 (56-122)||(12032573-12032639)
chr3 (340-520)||(28308404-28308585)
chr3 (138-199)||(28308707-28308768)
[»] chr7 (5 HSPs)
chr7 (35-254)||(27601663-27601886)
chr7 (336-520)||(27601961-27602147)
chr7 (31-99)||(2820461-2820529)
chr7 (190-262)||(2820570-2820642)
chr7 (362-423)||(2820736-2820799)
[»] chr1 (2 HSPs)
chr1 (336-390)||(22191821-22191875)
chr1 (336-390)||(3073802-3073856)
[»] chr6 (2 HSPs)
chr6 (341-399)||(28576494-28576552)
chr6 (363-399)||(333742-333778)
[»] chr2 (2 HSPs)
chr2 (58-111)||(13506527-13506580)
chr2 (331-372)||(32191525-32191566)


Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Original strand, 24571740 - 24572235
Alignment:
Q  18 gttgggaggtcaacctttgtgtaggagatttaggtgtctgtttgatttggtggagaataagtcgattacggtggcggtgatgtgtgttttgggttgggag 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24571740 gttgggaggtcaacctttgtgtaggagatttaggtgtctctttgatttgttggagaataagtcgattatggtggcggtgatgtgtgttttgggttgggag 24571839  T
Q  118 gatggttgggtaggttggcaggcggcataggttgtggacgtgggaggaggagatgtttagggattgtaggattttatttcatgacgtttctctgtaacat 217  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||    
T  24571840 gatggttgggtaggttggcatgcggcgtaggttgtgggcgtgggaggaggagatgtttagggagtgtaggattttatttcatgacatttctctgcaacat 24571939  T
Q  218 gatttttcagaccattggcagtggaggattgatcctagtggtggtggtggttactcgatatgtggcgtgtatcagttgcttactacttaagagacacaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24571940 gatttttcagaccattggcagtggaggattgatcctagtggtggtggtggttacttgatatgtggcgtgtatcagttgcttactacttaagagacacaca 24572039  T
Q  318 tccatgacgttactacatatttaatttggcacaaacatgttcctttgaaggtttctaattttgtttggagacttattcggaaggttgccatcaaaagata 417  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24572040 tccatgacgttactacagatttaatgtggcacaaacatgtttctttgaaggtttctatttttgtttggagacttattcggaaggttgccatcaaaagata 24572139  T
Q  418 atttggcggagtgcgacattatatctctcgaggctcagcattgcgtgtctgggtgtggcggtatcgagactgctcaacatttctttctttcttgcc 513  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24572140 atttggcggagtgcgacattatatctctcgaggctcaacattgcgtgtctgggtgtggcggtatcgagactgctcaacatttctttctttcttgcc 24572235  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 12032573 - 12032639
Alignment:
Q  56 tgtttgatttggtggagaataagtcgattacggtggcggtgatgtgtgttttgggttgggaggatgg 122  Q
    |||||||||| | || |||||||||||||||||| | ||||||||||| ||||||||||||||||||    
T  12032573 tgtttgattttgcggggaataagtcgattacggttgtggtgatgtgtgatttgggttgggaggatgg 12032639  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 520
Target Start/End: Complemental strand, 28308585 - 28308404
Alignment:
Q  340 aatttggcacaaacatgttcctttgaaggtttctaattttgtttggagacttattcgga--aggttgccatcaaaagataatttggcggagtgcgacatt 437  Q
    |||||||||||| || ||||| ||||||||||||| | ||| ||| |||||| ||||||  |||||||  ||||| |||||||||| ||   | ||||||    
T  28308585 aatttggcacaagcaggttcccttgaaggtttctattcttgcttgaagacttcttcggaataggttgctgtcaaaggataatttggtggcacgtgacatt 28308486  T
Q  438 atatctctcgaggctcagcattgcgtgtctgggtgtggcggtatcgagactgctcaacatttctttctttcttgcctttgctt 520  Q
    ||||||  | || | || | ||||||||| || ||||| ||| ||||||||   || |||||  |||||||||||| ||||||    
T  28308485 atatct-acaagtcacaactttgcgtgtccggatgtggaggtgtcgagactatccagcatttggttctttcttgcccttgctt 28308404  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 28308768 - 28308707
Alignment:
Q  138 ggcggcataggttgtggacgtgggaggaggagatgtttagggattgtaggattttatttcat 199  Q
    |||||| |||||||||| |||||||||||||||| ||  |||| ||||| |||||| |||||    
T  28308768 ggcggcgtaggttgtgggcgtgggaggaggagatcttaggggagtgtagaattttacttcat 28308707  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 254
Target Start/End: Original strand, 27601663 - 27601886
Alignment:
Q  35 tgtgtaggagatttaggtgtctgtttgatttggtggagaataagtcgattacggtggcggtgatgtgtgttttgggtt-gggaggatggttgggta-ggt 132  Q
    |||||||||| |||||| || ||||| ||||||  ||||||||||| ||||| |||||||||||| | | |||||||| ||||||  ||  ||| | | |    
T  27601663 tgtgtaggaggtttaggcgtttgtttaatttggcagagaataagtccattacagtggcggtgatgagcgatttgggttggggaggggggacggggatgct 27601762  T
Q  133 tggca--ggcggcataggttgtggacgtgggaggaggagatgtttagggattgtaggattttatttcatgacgtttctctgtaacatgatttttcagacc 230  Q
    |||||  |||||| |||||||||| ||||||||||||||| |||  |||| |||| ||||||| ||||| |  |||||||| | ||| ||| | |||| |    
T  27601763 tggcagtggcggcgtaggttgtgggcgtgggaggaggagaagttaggggagtgtaagattttacttcataatttttctctgcagcataattgtacagatc 27601862  T
Q  231 attggcagtggaggattgatccta 254  Q
    ||||| | ||||||  ||||||||    
T  27601863 attggtaatggaggtctgatccta 27601886  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 520
Target Start/End: Original strand, 27601961 - 27602147
Alignment:
Q  336 atttaatttggcacaaacatgttcctttgaaggtttctaattttgtttggagacttattcgga--aggttgccatcaaaagataatttggcggagtgcga 433  Q
    ||||||||||||||||||| ||| | ||||||||||||| | ||| ||||||| || |||| |  |||||| | ||||  |||||||| | || | ||||    
T  27601961 atttaatttggcacaaacaggtttccttgaaggtttctattcttgcttggagagttcttcgaaataggttgtcgtcaagggataatttagtggcgcgcga 27602060  T
Q  434 cattatatctctcgaggctcagcattgcgtgtctgggtgtggcggtatcgagactgctcaacatttctttctttcttgcctttgctt 520  Q
    |||||||| || | || |  ||| ||||||||| || ||||| ||| || ||||||   |||||||  |||||||||||| ||||||    
T  27602061 cattatatttcacaagtcatagctttgcgtgtccggatgtggaggtgtcaagactgtctaacatttggttctttcttgcccttgctt 27602147  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 2820461 - 2820529
Alignment:
Q  31 cctttgtgtaggagatttaggtgtctgtttgatttggtggagaataagtcgattacggtggcggtgatg 99  Q
    |||||||||||||| ||||||||| |||| |||||||  |||||||||| | |||| || |||||||||    
T  2820461 cctttgtgtaggaggtttaggtgtttgttagatttggaagagaataagttggttacagttgcggtgatg 2820529  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 2820570 - 2820642
Alignment:
Q  190 tttatttcatgacgtttctctgtaacatgatttttcagaccattggcagtggaggattgatcctagtggtggt 262  Q
    ||||||||||||| ||||| || | ||| ||||| ||||||||||| |||||| || || |||||||||||||    
T  2820570 tttatttcatgacatttctttgcagcataattttacagaccattggtagtggaagactgctcctagtggtggt 2820642  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 423
Target Start/End: Original strand, 2820736 - 2820799
Alignment:
Q  362 ttgaaggtttctaattttgtttggagacttattcggaa--ggttgccatcaaaagataatttgg 423  Q
    ||||||||||||| ||||||||| |||||| |||| ||  ||||||||||||| ||||||||||    
T  2820736 ttgaaggtttctatttttgtttgaagacttcttcgaaattggttgccatcaaaggataatttgg 2820799  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 22191821 - 22191875
Alignment:
Q  336 atttaatttggcacaaacatgttcctttgaaggtttctaattttgtttggagact 390  Q
    ||||||||||||| ||||| ||||||||||||||||||| | ||| |||||||||    
T  22191821 atttaatttggcataaacaggttcctttgaaggtttctattcttgcttggagact 22191875  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 390
Target Start/End: Complemental strand, 3073856 - 3073802
Alignment:
Q  336 atttaatttggcacaaacatgttcctttgaaggtttctaattttgtttggagact 390  Q
    ||||||||||||||||||| ||||| |||||||| |||| |||||  ||||||||    
T  3073856 atttaatttggcacaaacaggttcccttgaaggtctctatttttgcgtggagact 3073802  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 399
Target Start/End: Original strand, 28576494 - 28576552
Alignment:
Q  341 atttggcacaaacatgttcctttgaaggtttctaattttgtttggagacttattcggaa 399  Q
    |||||||| ||||| || ||  |||||||||||| |||||||||||||||| |||||||    
T  28576494 atttggcataaacaggtacccctgaaggtttctatttttgtttggagactttttcggaa 28576552  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 333742 - 333778
Alignment:
Q  363 tgaaggtttctaattttgtttggagacttattcggaa 399  Q
    |||||||||||| |||||||||||||||| |||||||    
T  333742 tgaaggtttctatttttgtttggagacttcttcggaa 333778  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 13506527 - 13506580
Alignment:
Q  58 tttgatttggtggagaataagtcgattacggtggcggtgatgtgtgttttgggt 111  Q
    |||||||| | ||||||||| |||||||||||||  |||||||||| |||||||    
T  13506527 tttgatttagcggagaataaatcgattacggtggttgtgatgtgtgatttgggt 13506580  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 372
Target Start/End: Complemental strand, 32191566 - 32191525
Alignment:
Q  331 tacatatttaatttggcacaaacatgttcctttgaaggtttc 372  Q
    |||||||||||||||||| ||||| ||||| |||||||||||    
T  32191566 tacatatttaatttggcataaacaggttcccttgaaggtttc 32191525  T

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