View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5759_low_40 (Length: 215)
Name: NF5759_low_40
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_low_40 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 8964223 - 8964406
Alignment:
| Q |
19 |
actaactaagttaatgtgcatattgttttagtatcaatatttaatgggcatatcgtttaccactaattggaaaagttgaattacaaattaaaaatagaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8964223 |
actaactaagttaatgtgcatattgttttagtatcaatatttaatgggcatatcgtttaccactaattggaaaagttgaattacaaattaaaaatagaga |
8964322 |
T |
|
| Q |
119 |
aagtacaaatgaaattgatgaaactgtagatgaaagaaaaccttattttctttgcaaacacattccattcaagctcttcatctc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8964323 |
aagtacaaatgaaattgatgaaactgtagatgaaagaaaaccatattttctttgcaaatacattccattcaagctcttcatctc |
8964406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 8944943 - 8944850
Alignment:
| Q |
68 |
atatcgtttaccactaattggaaaagttgaattacaaattaaaaatagagaaagtacaaatgaaattgatgaaactgtagatgaaagaaaacct |
161 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| |||||||||||||| | | || ||||||||||| |||| |||||||||||||||| |
|
|
| T |
8944943 |
atatcgtttaccactaatgaaaaaagttgaatcacagattaaaaatagagacggaaaaattgaaattgatggaactagagatgaaagaaaacct |
8944850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 21685667 - 21685541
Alignment:
| Q |
29 |
ttaatgtgcatattgttttagtatcaatatttaat-gggcatatcgtttaccactaattggaaaagttgaattacaaattaaaaatagagaaagtacaaa |
127 |
Q |
| |
|
||||||| |||||||||| ||| | ||| ||| || |||||||||||||||||| |||| ||||||||||||| | ||||| || | ||| || | || |
|
|
| T |
21685667 |
ttaatgttcatattgtttcagtttaaatgtttgatagggcatatcgtttaccaccaattaaaaaagttgaattatatattaagaaaatagacagaaaaag |
21685568 |
T |
|
| Q |
128 |
tgaaattgatgaaactgtagatgaaag |
154 |
Q |
| |
|
||||||||||| |||| ||||||||| |
|
|
| T |
21685567 |
tgaaattgatggaactagagatgaaag |
21685541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University