View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5759_low_5 (Length: 496)
Name: NF5759_low_5
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 9e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 6674644 - 6674806
Alignment:
| Q |
22 |
aatacatgacttcccnnnnnnntagcgaaatttaaacatatctacatactttcaatatatttaaatctcctccatcaatgagtgtaaataccatttgaaa |
121 |
Q |
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| T |
6674644 |
aatacatgacttcccaaaaaaatagcgaaatttaaacatatctacacactttcaatatatttaaatctcctccattaatgagtgtaaataccatttgaaa |
6674743 |
T |
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| Q |
122 |
ttacactaacgaactggaccactcccattgtttcaccaaactcactcgaaccatttctctcta |
184 |
Q |
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| T |
6674744 |
ttacactaacgtactggaccactcccattgtttcaccaaactcactcgcaccatttctctcta |
6674806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 6671581 - 6671714
Alignment:
| Q |
125 |
cactaacgaactggaccactcccattgtttcaccaaactcactcgaaccatttctctctacctaaaccacgaccgaatcactcactcgccgtggtggctc |
224 |
Q |
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| T |
6671581 |
cactaatgtactggacaacccccattgtttcaacaaactcacttgcaccatttctctctgcctaaaccacggccaaatcattcactcgccgtgctggctt |
6671680 |
T |
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| Q |
225 |
acaaactgatacaaatggattcctcctcctatga |
258 |
Q |
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| T |
6671681 |
acaaactgatacaaaaggattcctcgtcctatga |
6671714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 478
Target Start/End: Original strand, 6671780 - 6671933
Alignment:
| Q |
327 |
ttccgcgtcgaagatttcaaacttacaattccagcgattaaatttcatgctttggaaaa--gtacatcgttgccattctcgttatccccatcctccttct |
424 |
Q |
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| T |
6671780 |
ttccacgtcgaagatgtcaaacttgcaattccaacaattcaatttcacactccaaaaaaacgtacattgtcgccattctcgttctccccatcttatttct |
6671879 |
T |
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| Q |
425 |
cctcgtctcaattcccaatctccccgcgccacttccccatcgcctcattcatct |
478 |
Q |
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| T |
6671880 |
ccttatctcaattcccaatctccccacgccacttctccaccacctcattcatct |
6671933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 36854887 - 36854791
Alignment:
| Q |
382 |
aaaagtacatcgttgccattctcgttatccccatcctccttctcctcgtctcaattcccaatctccccgcgccacttccccatcgcctcattcatct |
478 |
Q |
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| T |
36854887 |
aaaagtacattgtggccattctcgttctcctcgtcctctttctcctcatctcaattcccaatctcctcgtgccacttctccaccgcctcattcatct |
36854791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 36855093 - 36855015
Alignment:
| Q |
173 |
catttctctctaccta-aaccacgaccgaatcactcactcgccgtggtggctcacaaactgatacaaatggattcctcc |
250 |
Q |
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|||||||||||||| |||||||||||| ||| |||||| | || || ||||||||||||||| |||||| ||||||| |
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| T |
36855093 |
catttctctctacccccaaccacgaccgagtcattcactctctgtcgtagctcacaaactgatataaatgggttcctcc |
36855015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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