View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5759_low_6 (Length: 487)
Name: NF5759_low_6
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 38955432 - 38955702
Alignment:
| Q |
18 |
atatatagttatgtaacaagagatactagttcaaatgaagagtaaaaattagaagnnnnnnntactaaacaactggatgagccttctcatagtcatagtc |
117 |
Q |
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| T |
38955432 |
atatatagttatgtaacaagagatactagttcaaatgaagagtaaaaattagaagaaaaga-tactgaacaactggatgagccttctcatagtcatagtc |
38955530 |
T |
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| Q |
118 |
cctct--------gactaggtaggtgattttattgtgatgtgttgtattgcatctcattttcttttttgatttgtttagcatccttgaatatgcattgtt |
209 |
Q |
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| T |
38955531 |
cctctgaggctctgactaggtaggtgattttattgtgatgtgttgtattgcatctcattttcttttttgatttgtttagcatcctt-aatatgcattgtt |
38955629 |
T |
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| Q |
210 |
tacttgaaacccatttcaacttttagnnnnnnnnatatatgatatgatttgcttctgcactagtaatttaatc |
282 |
Q |
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| T |
38955630 |
tacttgaaacccatttcaacttttagttttttttatatatgatatgatttgcttctgcactagtaatttaatc |
38955702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 274 - 477
Target Start/End: Original strand, 38956101 - 38956303
Alignment:
| Q |
274 |
aatttaatcacaagatgtctctgtacactagatattcccatatttttgtactgttttttgatgcctataataggaaatttcagtttctgttttaattttt |
373 |
Q |
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| T |
38956101 |
aatttaatcacaagatgtctctgtacactagatattcccatttttttgtactgttttctgatgcctataataggaaatttcagtttctgatttaattttt |
38956200 |
T |
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| Q |
374 |
aaatgttggtgactttggtttggttttgtacatgtctatttaagagagtgatgtagatatgtatgtat-gaatgaaattatataatttcatagtgtcgct |
472 |
Q |
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| T |
38956201 |
aaatgttggtgactttggtttggttttgtacatgtctatttaagagagtgatgtagatatgtatgtatatgatgaaat--tataatttcatagtgtcact |
38956298 |
T |
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| Q |
473 |
ctctg |
477 |
Q |
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| T |
38956299 |
ctctg |
38956303 |
T |
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