View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5759_low_7 (Length: 474)

Name: NF5759_low_7
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5759_low_7
NF5759_low_7
[»] chr3 (9 HSPs)
chr3 (254-456)||(24362934-24363136)
chr3 (86-145)||(6178083-6178142)
chr3 (7-51)||(6178012-6178056)
chr3 (104-145)||(49006124-49006165)
chr3 (104-145)||(49003452-49003493)
chr3 (78-145)||(51774150-51774220)
chr3 (104-142)||(37472132-37472170)
chr3 (113-142)||(21184499-21184528)
chr3 (106-142)||(35344218-35344254)
[»] chr7 (4 HSPs)
chr7 (78-145)||(33956950-33957017)
chr7 (78-145)||(37137462-37137529)
chr7 (7-51)||(37137549-37137593)
chr7 (104-142)||(43655456-43655493)
[»] chr4 (3 HSPs)
chr4 (78-145)||(47281410-47281477)
chr4 (81-143)||(20379164-20379226)
chr4 (7-51)||(20379107-20379151)
[»] chr1 (7 HSPs)
chr1 (80-145)||(33616044-33616109)
chr1 (80-145)||(50592815-50592880)
chr1 (9-51)||(33616130-33616172)
chr1 (7-51)||(50592904-50592948)
chr1 (104-142)||(12946449-12946487)
chr1 (7-51)||(48814997-48815041)
chr1 (7-51)||(48814854-48814898)
[»] scaffold0108 (2 HSPs)
scaffold0108 (80-145)||(18915-18980)
scaffold0108 (7-51)||(18844-18888)
[»] scaffold0339 (1 HSPs)
scaffold0339 (7-51)||(13148-13192)
[»] chr5 (4 HSPs)
chr5 (78-145)||(17086582-17086649)
chr5 (104-142)||(25057562-25057600)
chr5 (104-142)||(41555193-41555230)
chr5 (7-51)||(16437619-16437663)
[»] chr6 (2 HSPs)
chr6 (78-145)||(7690501-7690571)
chr6 (79-143)||(7684563-7684630)
[»] chr8 (1 HSPs)
chr8 (7-51)||(10161494-10161538)
[»] chr2 (3 HSPs)
chr2 (90-145)||(3403146-3403201)
chr2 (104-142)||(13587418-13587455)
chr2 (104-142)||(32342057-32342095)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 254 - 456
Target Start/End: Complemental strand, 24363136 - 24362934
Alignment:
Q  254 ttgggtgtgaccatagagtttttcttcaaatatttcaaaacgaagtacagttacaaccacacaaaagaaggtgaagattacttcacttcacacatttgat 353  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24363136 ttgggtgtgaccatagagtatttcttcaaatatttcaaaacgaagtacagttacaaccacacaaaagaaggtgaagattacttcacttcacacatttgat 24363037  T
Q  354 ggaaacgaaagtgttgcttatagttcaagttactagcacttaaaataaatacattaactgtccctttataaaacatgaattttaaaaactaaatcttgct 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24363036 ggaaacgaaagtgttgcttatagttcaagttactagcacttaaaataaatacattaactgtccctttataaaacatgaattttaaaaactaaatcttgct 24362937  T
Q  454 tgt 456  Q
    |||    
T  24362936 tgt 24362934  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 6178083 - 6178142
Alignment:
Q  86 tcaggatgcgacacgtgtaccggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6178083 tcaggatgcgacacgtgtaccggcggcccagtcccgccgtttcagatggcaggaacgagg 6178142  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 6178012 - 6178056
Alignment:
Q  7 acgtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 51  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  6178012 acgtgtcaaaatctgccggtcccgccatttcatatggcggtaatg 6178056  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 49006124 - 49006165
Alignment:
Q  104 accggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  49006124 accggcggcccagtcccgccgtttcagatggcaggaacgagg 49006165  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 49003493 - 49003452
Alignment:
Q  104 accggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  49003493 accggcggcgcagtcccgccgtttcagatgacgggaacgagg 49003452  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 51774220 - 51774150
Alignment:
Q  78 gtggccaatcaggatgcgacacgtgt---accggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    ||||||| |||||||||||||  |||   |||||| |||||| |||||||||||||||||| |||||||||    
T  51774220 gtggccagtcaggatgcgacagctgtcagaccggcagcccagccccgccgtttcagatggcaggaacgagg 51774150  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 37472170 - 37472132
Alignment:
Q  104 accggcggcccagtcccgccgtttcagatggcgggaacg 142  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  37472170 accggcggcccagtcccgccgttacaggtggcgggaacg 37472132  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 142
Target Start/End: Original strand, 21184499 - 21184528
Alignment:
Q  113 ccagtcccgccgtttcagatggcgggaacg 142  Q
    ||||||||||||||||||||||||||||||    
T  21184499 ccagtcccgccgtttcagatggcgggaacg 21184528  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 35344218 - 35344254
Alignment:
Q  106 cggcggcccagtcccgccgtttcagatggcgggaacg 142  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  35344218 cggcggcccagtccctccgtttcaggtggcgggaacg 35344254  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 33957017 - 33956950
Alignment:
Q  78 gtggccaatcaggatgcgacacgtgtaccggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33957017 gtggccattcaggatgcgacacgtgtaccggcggctcagtcccgccgtttcagatggcgggaacgagg 33956950  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 37137529 - 37137462
Alignment:
Q  78 gtggccaatcaggatgcgacacgtgtaccggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  37137529 gtggccagtcaggatgcgacacgtgtaccagcggcctagtcccgccgtttcagatggcgggaacgagg 37137462  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 37137593 - 37137549
Alignment:
Q  7 acgtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 51  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  37137593 acgtgtcaaaatttgccggtcccgccatttcaaatggcggtaatg 37137549  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 43655456 - 43655493
Alignment:
Q  104 accggcggcccagtcccgccgtttcagatggcgggaacg 142  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  43655456 accggcggcc-agtcccgccgtttcagatggcgggaacg 43655493  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 47281410 - 47281477
Alignment:
Q  78 gtggccaatcaggatgcgacacgtgtaccggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    ||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47281410 gtggccagtcaggatgcgccacgtgtaccggcggctcagtcccgccgtttcagatggcgggaacgagg 47281477  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 20379164 - 20379226
Alignment:
Q  81 gccaatcaggatgcgacacgtgtaccggcggcccagtcccgccgtttcagatggcgggaacga 143  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  20379164 gccagtcaggatgcgacacgtgtaccggcggctcagtcctgccgtttcagatggcgggaacga 20379226  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 20379107 - 20379151
Alignment:
Q  7 acgtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20379107 acgtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 20379151  T

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Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 33616109 - 33616044
Alignment:
Q  80 ggccaatcaggatgcgacacgtgtaccggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33616109 ggccagtcaggatgtgacacgtgtaccggcggcccagtcccgccatttcagatggcgggaacgagg 33616044  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 50592880 - 50592815
Alignment:
Q  80 ggccaatcaggatgcgacacgtgtaccggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    ||||| |||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  50592880 ggccagtcaggatgcgccacgtgtactggcggctcagtcccgccgtttcagatggcgggaacgagg 50592815  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 33616172 - 33616130
Alignment:
Q  9 gtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 51  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33616172 gtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 33616130  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 50592948 - 50592904
Alignment:
Q  7 acgtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 51  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  50592948 acgtgtcaaaatctgccggtcccgccatttcaaatgacggtaatg 50592904  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 12946487 - 12946449
Alignment:
Q  104 accggcggcccagtcccgccgtttcagatggcgggaacg 142  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  12946487 accggcggcccagtcccgccgtttcaggtggcgggaacg 12946449  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 48814997 - 48815041
Alignment:
Q  7 acgtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 51  Q
    |||||||||||||||||  |||||||||||||| |||||||||||    
T  48814997 acgtgtcaaaatctgccattcccgccatttcaattggcggtaatg 48815041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 48814854 - 48814898
Alignment:
Q  7 acgtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 51  Q
    |||||||||||||||||  |||||||||||||| ||| |||||||    
T  48814854 acgtgtcaaaatctgccattcccgccatttcaattggtggtaatg 48814898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 18915 - 18980
Alignment:
Q  80 ggccaatcaggatgcgacacgtgtaccggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||    
T  18915 ggccagtcaggatgcgccacgtgtaccggcggctcagtcccgccgtttcagatggccggaacgagg 18980  T

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Target: scaffold0108; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 18844 - 18888
Alignment:
Q  7 acgtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 51  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  18844 acgtgtcaaaatctgccggtcccgccatttcaaatggtggtaatg 18888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 13148 - 13192
Alignment:
Q  7 acgtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13148 acgtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 13192  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 17086649 - 17086582
Alignment:
Q  78 gtggccaatcaggatgcgacacgtgtaccggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    ||||||| |||||| ||| ||||| |||||||||| |||||||||| |||||||||||||||||||||    
T  17086649 gtggccagtcaggacgcgccacgtttaccggcggctcagtcccgccatttcagatggcgggaacgagg 17086582  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 25057600 - 25057562
Alignment:
Q  104 accggcggcccagtcccgccgtttcagatggcgggaacg 142  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  25057600 accggcggcccagtcccgccgtttcaggtgacgggaacg 25057562  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 41555230 - 41555193
Alignment:
Q  104 accggcggcccagtcccgccgtttcagatggcgggaacg 142  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  41555230 accggcggcc-agtcccgccgtttcagatggcgggaacg 41555193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 16437663 - 16437619
Alignment:
Q  7 acgtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 51  Q
    ||||||||||||||| |  |||||||||||||| |||||||||||    
T  16437663 acgtgtcaaaatctgtcattcccgccatttcaattggcggtaatg 16437619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 7690501 - 7690571
Alignment:
Q  78 gtggccaatcaggatgcgacacgtgt---accggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    ||||||| |||||||||||||  |||   |||||||||||||||||||||||||| ||| |||||||||||    
T  7690501 gtggccattcaggatgcgacagctgtcagaccggcggcccagtcccgccgtttcaaatgacgggaacgagg 7690571  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 7684630 - 7684563
Alignment:
Q  79 tggccaatcaggatgcgacacgtgt---accggcggcccagtcccgccgtttcagatggcgggaacga 143  Q
    |||||| |||||||||||||  |||   |||||||||||||||| || ||||||||||| ||||||||    
T  7684630 tggccagtcaggatgcgacagctgtcagaccggcggcccagtcctgctgtttcagatggagggaacga 7684563  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 10161538 - 10161494
Alignment:
Q  7 acgtgtcaaaatctgccggtcccgccatttcaaatggcggtaatg 51  Q
    |||||||||||||||||  |||||||||||||| |||||||||||    
T  10161538 acgtgtcaaaatctgccattcccgccatttcaattggcggtaatg 10161494  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 3403146 - 3403201
Alignment:
Q  90 gatgcgacacgtgtaccggcggcccagtcccgccgtttcagatggcgggaacgagg 145  Q
    |||||| ||||| |||||  ||| |||||||||||||||||||||||| |||||||    
T  3403146 gatgcgccacgtttaccgatggctcagtcccgccgtttcagatggcggaaacgagg 3403201  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 13587455 - 13587418
Alignment:
Q  104 accggcggcccagtcccgccgtttcagatggcgggaacg 142  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  13587455 accggcggcc-agtcccgccgtttcagatggcgggaacg 13587418  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 32342095 - 32342057
Alignment:
Q  104 accggcggcccagtcccgccgtttcagatggcgggaacg 142  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  32342095 accggcggcccagtcccgtcgtttcaggtggcgggaacg 32342057  T

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