View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5759_low_8 (Length: 459)
Name: NF5759_low_8
Description: NF5759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5759_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Original strand, 6731936 - 6732366
Alignment:
| Q |
11 |
cacagaaacaccatacttgagcaactcaatcttcaactcagtgaaaaggtcaagccttccggtaaattcaggaacttgaggagcaccacaccaaaacctt |
110 |
Q |
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| T |
6731936 |
cacagaaacaccatacttgagcaactcaatcttcaactcagtgaaaaggtcaagccttccagtaaattcaggaacttgaggagcaccacaccaaaacctt |
6732035 |
T |
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| Q |
111 |
atttgattcccatgaatcttttccgcaagaaccaacagcttcatcaaatcccttttattctcaaatggaacaacaacagacgaatgccagtgaagagcat |
210 |
Q |
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| T |
6732036 |
atttgattcccatgaatcttttccgcaagaaccaacagcttcatcaaatcccttttattctcaaatggaacaacaacagacgaatgccagtcaagagcat |
6732135 |
T |
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| Q |
211 |
caagtttcttctgaagcttttcttgttgagctggacaagacaaacagttcttgaaagtaggcttcttgctttttcttacaagatctgtgagctctcctgt |
310 |
Q |
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| T |
6732136 |
caagtttcttctgaagcttttcttgttgagctggacaagacaaacaattcttgaaagtaggcttcttgctttttcttacaagatctgtgagctctcctgt |
6732235 |
T |
|
| Q |
311 |
gatagactctactatttctgtatcttcacttggtcgacccaacgaatcgttgcaaattattatctcttcaaccagaggagccaaagcattgcaagttttt |
410 |
Q |
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| T |
6732236 |
gatagtctctactatttctgtatcttcacttggtcgacccaacgaatcgttgcaaacaattatctcttcaaccagaggagccaaagcattgcaagttttt |
6732335 |
T |
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| Q |
411 |
ctgcctctttcgagagtggaagggtactttc |
441 |
Q |
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| T |
6732336 |
ctgcctctttcgagagtggaagggtactttc |
6732366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 429
Target Start/End: Original strand, 6725774 - 6725870
Alignment:
| Q |
333 |
tcttcacttggtcgacccaacgaatcgttgcaaattattatctcttcaaccagaggagccaaagcattgcaagtttttctgcctctttcgagagtgg |
429 |
Q |
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| T |
6725774 |
tcttctcttggtcgacccaacgaatagttgtaaccttttatctgttcaaccaaaggatccaaagccttggaagtttctatgctcttttcgagagtgg |
6725870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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