View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5760-Insertion-2 (Length: 846)

Name: NF5760-Insertion-2
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5760-Insertion-2
NF5760-Insertion-2
[»] scaffold0053 (2 HSPs)
scaffold0053 (305-846)||(27542-28078)
scaffold0053 (8-306)||(27185-27484)
[»] chr6 (13 HSPs)
chr6 (485-846)||(18615137-18615498)
chr6 (370-778)||(10820850-10821256)
chr6 (440-671)||(14271621-14271853)
chr6 (436-702)||(19490728-19490993)
chr6 (523-751)||(4097768-4097996)
chr6 (526-741)||(10814797-10815012)
chr6 (585-731)||(11703993-11704139)
chr6 (440-642)||(17208817-17209017)
chr6 (493-692)||(239921-240117)
chr6 (477-562)||(22562937-22563022)
chr6 (462-605)||(10481925-10482067)
chr6 (173-251)||(19490402-19490481)
chr6 (700-751)||(19691925-19691976)
[»] chr2 (39 HSPs)
chr2 (462-768)||(25916583-25916888)
chr2 (492-801)||(21548245-21548554)
chr2 (512-822)||(29409481-29409791)
chr2 (304-677)||(22311850-22312221)
chr2 (304-768)||(19564301-19564768)
chr2 (448-820)||(21748450-21748819)
chr2 (439-677)||(17417511-17417755)
chr2 (588-751)||(16587098-16587261)
chr2 (454-574)||(26653537-26653656)
chr2 (549-756)||(27765602-27765809)
chr2 (439-752)||(27315534-27315841)
chr2 (681-846)||(21578078-21578244)
chr2 (581-805)||(16917355-16917580)
chr2 (581-751)||(19878061-19878231)
chr2 (500-682)||(22132317-22132498)
chr2 (440-573)||(26654869-26655000)
chr2 (455-578)||(16197637-16197760)
chr2 (474-662)||(26653241-26653427)
chr2 (581-642)||(45621995-45622056)
chr2 (490-731)||(35666088-35666326)
chr2 (681-752)||(22311584-22311655)
chr2 (662-753)||(24764501-24764592)
chr2 (690-749)||(28449478-28449537)
chr2 (581-752)||(42256213-42256384)
chr2 (645-731)||(45572270-45572356)
chr2 (645-731)||(45575937-45576023)
chr2 (645-731)||(45579604-45579690)
chr2 (645-731)||(45583271-45583357)
chr2 (645-731)||(45586938-45587024)
chr2 (645-731)||(45590605-45590691)
chr2 (645-731)||(45594272-45594358)
chr2 (645-731)||(45597939-45598025)
chr2 (645-731)||(45601606-45601692)
chr2 (645-731)||(45605273-45605359)
chr2 (645-731)||(45608940-45609026)
chr2 (645-731)||(45612607-45612693)
chr2 (645-731)||(45616274-45616360)
chr2 (468-559)||(16587275-16587363)
chr2 (167-251)||(21548879-21548964)
[»] chr7 (15 HSPs)
chr7 (304-846)||(22974933-22975476)
chr7 (492-787)||(1777038-1777332)
chr7 (464-739)||(17891370-17891644)
chr7 (583-731)||(10646799-10646947)
chr7 (464-741)||(32957410-32957687)
chr7 (448-747)||(26822118-26822418)
chr7 (523-751)||(27707324-27707551)
chr7 (513-676)||(48358177-48358339)
chr7 (485-751)||(1782840-1783106)
chr7 (490-615)||(19142098-19142223)
chr7 (490-615)||(20741497-20741622)
chr7 (167-250)||(22974677-22974761)
chr7 (126-165)||(44806928-44806967)
chr7 (685-751)||(12733628-12733694)
chr7 (589-641)||(5265193-5265245)
[»] chr5 (16 HSPs)
chr5 (440-752)||(6998922-6999235)
chr5 (472-823)||(24492361-24492712)
chr5 (477-782)||(30608224-30608534)
chr5 (454-751)||(26013527-26013824)
chr5 (477-747)||(22825967-22826236)
chr5 (472-732)||(24838384-24838645)
chr5 (581-738)||(37336564-37336721)
chr5 (523-617)||(25936354-25936446)
chr5 (125-166)||(5958267-5958308)
chr5 (691-751)||(16791264-16791324)
chr5 (462-573)||(19569785-19569896)
chr5 (655-751)||(26335564-26335660)
chr5 (584-739)||(27499738-27499893)
chr5 (124-166)||(11636724-11636766)
chr5 (453-578)||(21391409-21391534)
chr5 (370-431)||(24494848-24494908)
[»] chr4 (18 HSPs)
chr4 (387-846)||(22222612-22223071)
chr4 (368-846)||(18445656-18446132)
chr4 (423-752)||(19555315-19555645)
chr4 (464-747)||(19053027-19053308)
chr4 (564-746)||(11449398-11449580)
chr4 (529-751)||(11545090-11545311)
chr4 (485-641)||(14475133-14475289)
chr4 (304-510)||(21588524-21588731)
chr4 (492-670)||(47575539-47575717)
chr4 (474-641)||(17474216-17474382)
chr4 (581-747)||(11419642-11419808)
chr4 (595-752)||(21588309-21588466)
chr4 (496-545)||(8911496-8911545)
chr4 (166-256)||(21588927-21589017)
chr4 (700-751)||(12236272-12236323)
chr4 (653-751)||(13977307-13977406)
chr4 (653-751)||(23866013-23866112)
chr4 (462-574)||(22316878-22316989)
[»] chr3 (19 HSPs)
chr3 (409-799)||(27485911-27486298)
chr3 (435-789)||(46348760-46349112)
chr3 (523-751)||(13291691-13291919)
chr3 (518-751)||(10928826-10929059)
chr3 (441-751)||(16199035-16199344)
chr3 (472-751)||(17118842-17119120)
chr3 (534-728)||(19306959-19307153)
chr3 (475-677)||(21528157-21528357)
chr3 (304-504)||(36863701-36863901)
chr3 (454-642)||(9323417-9323604)
chr3 (585-751)||(4514613-4514778)
chr3 (467-562)||(15331499-15331593)
chr3 (526-821)||(14427155-14427450)
chr3 (306-389)||(11074204-11074287)
chr3 (513-642)||(11829626-11829752)
chr3 (587-676)||(21318400-21318488)
chr3 (173-249)||(27486490-27486567)
chr3 (534-641)||(17034563-17034668)
chr3 (515-614)||(19905614-19905711)
[»] chr1 (21 HSPs)
chr1 (474-776)||(17496619-17496923)
chr1 (529-821)||(15787701-15787994)
chr1 (474-821)||(12669028-12669374)
chr1 (440-749)||(37283329-37283639)
chr1 (474-821)||(19019062-19019406)
chr1 (492-731)||(22638160-22638399)
chr1 (487-751)||(26897893-26898157)
chr1 (524-789)||(30805804-30806070)
chr1 (474-641)||(12397638-12397805)
chr1 (492-731)||(19003152-19003390)
chr1 (456-687)||(9756603-9756834)
chr1 (493-782)||(22666106-22666398)
chr1 (515-719)||(18932728-18932931)
chr1 (523-619)||(17316516-17316612)
chr1 (523-641)||(33438801-33438919)
chr1 (167-280)||(12669681-12669795)
chr1 (440-605)||(24006390-24006555)
chr1 (673-751)||(17316399-17316477)
chr1 (655-751)||(19960269-19960364)
chr1 (523-635)||(25791572-25791682)
chr1 (702-751)||(21721139-21721188)
[»] chr8 (14 HSPs)
chr8 (440-752)||(13645065-13645376)
chr8 (440-752)||(13745490-13745801)
chr8 (534-751)||(23584916-23585133)
chr8 (477-751)||(28890120-28890393)
chr8 (631-812)||(27118593-27118774)
chr8 (549-747)||(24277194-24277390)
chr8 (454-662)||(24987536-24987743)
chr8 (581-739)||(23520989-23521147)
chr8 (564-639)||(24269403-24269477)
chr8 (581-720)||(26576542-26576682)
chr8 (491-677)||(5826152-5826338)
chr8 (491-677)||(5828751-5828937)
chr8 (568-619)||(18528219-18528270)
chr8 (585-642)||(23433040-23433096)
[»] scaffold0041 (1 HSPs)
scaffold0041 (440-676)||(26258-26491)
[»] scaffold0062 (1 HSPs)
scaffold0062 (462-677)||(2418-2632)
[»] scaffold0650 (1 HSPs)
scaffold0650 (526-751)||(5766-5992)
[»] scaffold1190 (1 HSPs)
scaffold1190 (691-751)||(1298-1358)
[»] scaffold0514 (1 HSPs)
scaffold0514 (691-751)||(7272-7332)
[»] scaffold0068 (1 HSPs)
scaffold0068 (513-573)||(57105-57165)
[»] scaffold0088 (1 HSPs)
scaffold0088 (689-732)||(42184-42227)


Alignment Details
Target: scaffold0053 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 305 - 846
Target Start/End: Original strand, 27542 - 28078
Alignment:
Q  305 gagacttctatttgttaatagcaaatataaacaaacttattcttacatcatatatacaaaagttggtgtaaattgaacaatctttgaacaaactctttaa 404  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27542 gagacttctatttgttcatagcaaatataaacaaacttattcttacatcagatatacaaaagttggtgtaaattgaacaatctttgaacaaactctttaa 27641  T
Q  405 gacttttagggtttttaagatacaaaaattgaacgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagt 504  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||    
T  27642 gacttttaggatttttaagatacaaaaattgaacgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagt-----tagcagagt 27736  T
Q  505 attgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttca 604  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  27737 attgttgatcttctttaggtcttcagctacttatataggcggggatttgagagacgtttgagaagagtgccaacgtattaagagtcgttgagaagcttca 27836  T
Q  605 aatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgt 704  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27837 aatcaaggacgttgggccattgcctgatatggataattctgttggatagtcatttgaaaatcctttgctgaaaatagaagtatccgttcattcttattgt 27936  T
Q  705 ccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatccttgatagagacaactatagaagacaataaatctgatgt 804  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  27937 ccttgaagttatttgtctgtttctatacatggtcagatgaagacaaaactgaactcagatccttgatagagacaactatagaagacaataaatctgacgt 28036  T
Q  805 gcagtttgagtccctcatggtcttccgaagtctgaaggtctt 846  Q
    ||||||||||||||||||||||||| ||||||| ||||||||    
T  28037 gcagtttgagtccctcatggtcttctgaagtctaaaggtctt 28078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 27185 - 27484
Alignment:
Q  8 aaagtcaactaaaagaaatactcttgtatcctatttacaagaaacaaaacaccttatttactagatcaatgaaacatcttgaaaatcattatttgtaatt 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27185 aaagtcaaataaaagaaatactcttgtatcctatttacaagaaacaaaacaccttatttactagatcaatgaaacatcatgaaaatcattatttgtaatt 27284  T
Q  108 aatacttttgtcaatttaaaaagggtttgtctaatatgttcaatattacacatgttaaatcaatgactcttccaaaagacttctaacgctcaaacacact 207  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27285 aatacttttgtaaatttaaaaagagtttgtctaacatgttcaatattacacatgttaaatcaatgactcttccaaaagacttctaacgctcaaacacatt 27384  T
Q  208 tgtaaaagacttctaatgctc-aagatcactaccaagagacttcctttacacaaacacaactgcagaagacttccaatgctaaatgacaacatcaagaga 306  Q
    || || ||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27385 tgcaagagacttctaatgctctaaggtcactaccaagagacttcctttgcacaaacacaattgcagaagacttccaatgctaaatgacaacatcaagaga 27484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 2e-91; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 485 - 846
Target Start/End: Complemental strand, 18615498 - 18615137
Alignment:
Q  485 cacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatatta 584  Q
    |||||||||||||||||||| || || |||||||| |||||||||||| |||||||||||||| |||||||||||||| || ||| |||||| || ||||    
T  18615498 cacagtaaaaatagcagagtcttattaatcttcttcaggtcttcagctccttatataggcagggatttgagagacattggaaaagtgtgccaccacatta 18615399  T
Q  585 agagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaag 684  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| | ||||    
T  18615398 agagttgttaagaagcttcaaatcaaggacgttgagccattgcctgatattgataattctgttggatagtcattcgaaaatcctttgctgaaactggaag 18615299  T
Q  685 tattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatcc-ttgatagagacaactat 783  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||||  |||||| | ||||||||||||   || |||||| |||||   |||||||||    
T  18615298 tattcgtgcattcctattgcccttgaagttctttgtatgtttctacatgtggtcaaaagaagacaaaactatgctcagatcctttgatgtggacaactat 18615199  T
Q  784 agaagacaataaatctgatgtgcagtttgagtccctcatggtcttccgaagtctgaaggtctt 846  Q
    ||||||| |  |||| || ||| |||||| ||||||||   |||||  |||||||||||||||    
T  18615198 agaagacga-caatcagacgtggagtttgggtccctcagcttcttctaaagtctgaaggtctt 18615137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 370 - 778
Target Start/End: Original strand, 10820850 - 10821256
Alignment:
Q  370 gtgtaaattgaacaatctttgaacaaactctttaagacttttagggtttttaagatacaaaaattga-acgaaaatccaaagtgtttttgcggtatttga 468  Q
    ||||||| |||||||| || |||||||||||| |||||||| ||| ||| ||| | |||||  |||| | ||||||||||||| |||||||  |||||||    
T  10820850 gtgtaaactgaacaatgtt-gaacaaactctt-aagacttt-aggatttctaatacacaaactttgataagaaaatccaaagtatttttgcactatttga 10820946  T
Q  469 ttcgg-cagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgaga 567  Q
    ||  | |||| ||||| || ||||||  ||| ||||| ||||| |||||||| |||| |||||||  |||||||||||   ||||||||||| |  ||||    
T  10820947 ttttgacagattaatggcaaagtaaag-tagaagagtcttgttaatcttcttcaggtattcagctttttatataggcaaagatttgagagacgtcggaga 10821045  T
Q  568 agagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcc 667  Q
    |||||| || |  |||||||||| |||| ||||||  ||||| ||| ||| | ||||||||||||||||||||||  |||| |||| ||||||||| ||     
T  10821046 agagtgtcagcgcattaagagtcattgaaaagctttgaatcatggatgttagaccattgcctgatatggataatttcgttgaatagccatttgaaattct 10821145  T
Q  668 tttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatcct 767  Q
    |||||||||| | ||| |||||||||||| |  |||||||| |||| |||| |  |||||||||| |||||||| ||||| |||| || ||| |||||||    
T  10821146 tttgctgaaactggaattattcgttcattttctttgtccttaaagtcctttttccgtttctacacgtggtcagaagaagataaaattgtactcagatcct 10821245  T
Q  768 tgatagagaca 778  Q
    |||||||||||    
T  10821246 tgatagagaca 10821256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 440 - 671
Target Start/End: Original strand, 14271621 - 14271853
Alignment:
Q  440 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttcttta-ggtcttcagctacttat 538  Q
    ||||||| ||| |||| |||| ||||||||| |  |||||||||| ||||| |||| |||||||||||||| || ||||| | ||| |||| || |||||    
T  14271621 aaaatcctaagagtttatgcgctatttgatttgatagagtaatgatacagttaaaaaagcagagtattgtttatattcttcatggttttcatctccttat 14271720  T
Q  539 ataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggat 638  Q
    ||||||||| ||||||||||  || |||||||||| ||   ||| |||||||||||||||||||||||||||||| | ||  |||||||  |||||||||    
T  14271721 ataggcagggatttgagagatgttggagaagagtggcattgtataaagagtcgttgagaagcttcaaatcaaggatgatgaaccattgctagatatggat 14271820  T
Q  639 aattatgttggatagtcatttgaaaatcctttg 671  Q
    |||| ||||||||||||||| ||||||||||||    
T  14271821 aattgtgttggatagtcattcgaaaatcctttg 14271853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 436 - 702
Target Start/End: Original strand, 19490728 - 19490993
Alignment:
Q  436 aacgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctact 535  Q
    ||||||| ||| |||| | |||||| ||||||||| || ||||||||| |||||||||||||  ||||| || || ||| |||| |||||||||| | |     
T  19490728 aacgaaagtcctaagtttatttgcgctatttgatttgg-agagtaatggcacagtaaaaatattagagtcttcttaatcctcttcaggtcttcagttcca 19490826  T
Q  536 tatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatg 635  Q
    ||||||| || | ||||||||||| ||  |||  ||||||| |  |||||||||| ||||||| |||| |||||||||||||| |||||||| |||||||    
T  19490827 tatatagccacggatttgagagacgttgcagagaagtgccagcgcattaagagtcattgagaatcttcgaatcaaggacgttgagccattgcatgatatg 19490926  T
Q  636 gataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttatt 702  Q
    ||||||| || |||||| ||||||||||||||||||||||||   |||||||  ||||||| |||||    
T  19490927 gataattttgatggatattcatttgaaaatcctttgctgaaataggaagtatctgttcattattatt 19490993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 523 - 751
Target Start/End: Complemental strand, 4097996 - 4097768
Alignment:
Q  523 gtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggcc 622  Q
    ||||| |||| |||||||||||| ||||| ||||||| || |||||||||| ||||  ||||||||||||||| ||  || |||||||||||||||||      
T  4097996 gtcttaagctccttatataggcaagaattcgagagacgttggagaagagtgtcaacgcattaagagtcgttgataaattttaaatcaaggacgttgggaa 4097897  T
Q  623 attgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtat 722  Q
    |||||||||||||||||||    |||  |||  |||||||| ||||||| |||| || ||| |||  |||||||||  |||||||||||||||||||| |    
T  4097896 attgcctgatatggataatgtctttgattagaaatttgaaattcctttgttgaatatggaattatcggttcattctctttgtccttgaagttctttgttt 4097797  T
Q  723 gtttctacacatggtcagatgaagacaaa 751  Q
     ||||||||  |||||||||||| |||||    
T  4097796 atttctacatgtggtcagatgaacacaaa 4097768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 526 - 741
Target Start/End: Complemental strand, 10815012 - 10814797
Alignment:
Q  526 ttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccatt 625  Q
    ||||||| |||||||| ||| | ||||||||||  || ||||||| || |||| ||||||||||| |||||||||||||||||||| | ||| | || ||    
T  10815012 ttcagctccttatatatgcaaggatttgagagatgttggagaagaatgtcaacgtattaagagtcattgagaagcttcaaatcaagaatgtttgcccttt 10814913  T
Q  626 gcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtt 725  Q
    || ||||||||||||||  |||   ||| ||||||||| |||||||| |||| |  || ||| ||||||||||  |||||||| ||||||||||| ||||    
T  10814912 gcttgatatggataattccgttaattagacatttgaaattcctttgcagaaactgaaattatccgttcattctctttgtcctttaagttctttgtttgtt 10814813  T
Q  726 tctacacatggtcaga 741  Q
    ||||||| ||||||||    
T  10814812 tctacacgtggtcaga 10814797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 585 - 731
Target Start/End: Complemental strand, 11704139 - 11703993
Alignment:
Q  585 agagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaag 684  Q
    |||||||||| |||||||||||||||| |||||||   ||||||| |||| ||||||  |||||  |||  |||||||||||||||||||||| | |||     
T  11704139 agagtcgttgtgaagcttcaaatcaagcacgttggattattgcctaatatagataatgttgttgattagatatttgaaaatcctttgctgaaactggaat 11704040  T
Q  685 tattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    ||||||||||||||  |||| ||||||||||||||| ||||| ||||    
T  11704039 tattcgttcattctctttgtacttgaagttctttgtttgtttataca 11703993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 440 - 642
Target Start/End: Original strand, 17208817 - 17209017
Alignment:
Q  440 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgat-cttctttaggtcttcagctacttat 538  Q
    ||||||| ||||||||| ||| ||||||||| | ||||||||||| |||| |||||||||| ||| ||||||   |||||| |||||||||||| |||||    
T  17208817 aaaatcctaagtgtttt-gcgctatttgatttgacagagtaatgaaacag-aaaaatagcaaagtcttgttgtcacttcttcaggtcttcagctccttat 17208914  T
Q  539 ataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggat 638  Q
    ||||||||  |  | |||||| || |||||||||| || || |   ||| ||||||||||||||| ||||||| ||||||| || ||||||||||| |||    
T  17208915 ataggcagtgaaataagagacgttggagaagagtgtcagcacaaatagaatcgttgagaagcttc-aatcaagaacgttggccctttgcctgatatagat 17209013  T
Q  639 aatt 642  Q
    ||||    
T  17209014 aatt 17209017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 493 - 692
Target Start/End: Complemental strand, 240117 - 239921
Alignment:
Q  493 aaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgt 592  Q
    |||||||| ||| ||||| |||||||| ||| |||||||| ||||| |||||||  | ||||||||| || |||||||||| |  || |  || ||||||    
T  240117 aaatagcatagtcttgttaatcttcttcaggccttcagctccttatctaggcagctacttgagagacgttggagaagagtgtccgcaca--aatagtcgt 240020  T
Q  593 tgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgtt 692  Q
    ||||||||||||| ||||| ||||||  || |||||||||||||||||||  |||| || ||| ||| ||  ||||||| ||||| ||||| | ||||||    
T  240019 tgagaagcttcaa-tcaagaacgttgtccctttgcctgatatggataattcggttgaatggtccttttaagttcctttgttgaaagtagaatttttcgtt 239921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 477 - 562
Target Start/End: Complemental strand, 22563022 - 22562937
Alignment:
Q  477 agtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatt 562  Q
    |||||||||||||||||||||||||||| |||||  | ||||| | |||||||||  |||||||||||| | |||||| |||||||    
T  22563022 agtaatgacacagtaaaaatagcagagttttgttagtattcttaaagtcttcagcatcttatataggcaaggatttgacagacatt 22562937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 605
Target Start/End: Original strand, 10481925 - 10482067
Alignment:
Q  462 tatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacat 561  Q
    |||| |||| || |||||| || |||||||||| ||||| ||| ||||| ||||||||  |  |||||| |||||| ||| ||||  ||||||| ||| |    
T  10481925 tattagatttggtagagtagtggcacagtaaaa-tagcaaagtcttgttaatcttcttcggaacttcagatacttaaatatgcagtcatttgagggacgt 10482023  T
Q  562 ttgagaagagtgccaacatattaagagtcgttgagaagcttcaa 605  Q
    | |||| ||||| |||| ||   |||||||||||||||||||||    
T  10482024 tggagacgagtgtcaacgtaaatagagtcgttgagaagcttcaa 10482067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 19490402 - 19490481
Alignment:
Q  173 actcttccaaaagacttctaac-gctcaaacacacttgtaaaagacttctaatgctcaagatcactaccaagagacttcc 251  Q
    |||||||||| ||||||| ||  |||||| ||| |||| || |||||||| |||||||||||||||| ||| ||||||||    
T  19490402 actcttccaagagacttccaaatgctcaagcactcttgcaagagacttctcatgctcaagatcactaacaatagacttcc 19490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 751
Target Start/End: Complemental strand, 19691976 - 19691925
Alignment:
Q  700 attgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    ||||||||||||| ||||||| ||||||||||||| |||||| || ||||||    
T  19691976 attgtccttgaagctctttgtttgtttctacacatagtcagaagaggacaaa 19691925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 171; Significance: 2e-91; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 462 - 768
Target Start/End: Complemental strand, 25916888 - 25916583
Alignment:
Q  462 tatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacat 561  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||  |||| |||||||| | ||||| ||||  ||||||||||||| ||||||||||  |    
T  25916888 tatttgatttggcagagtaatgacacggtaaaaacagcagagtcatgttcatcttcttgatgtctttagctcgttatataggcagggatttgagagatgt 25916789  T
Q  562 ttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttga 661  Q
    ||||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||    
T  25916788 ttgagaagagtgccagcagat-aagagtcgttgagaagcttcaaatcaaggacgttgagccattgcctgatatggataattctgttggatagtcattcga 25916690  T
Q  662 aaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaa 761  Q
    ||||| |||||||||| |||||||||  |||||||||||||| ||||||||||||||   ||||||||||| |||||||| |||||||||||||  || |    
T  25916689 aaatcatttgctgaaactagaagtatatgttcattcttattgcccttgaagttcttttcttgtttctacacgtggtcagaagaagacaaaactgtgctca 25916590  T
Q  762 gatcctt 768  Q
    |||||||    
T  25916589 gatcctt 25916583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 492 - 801
Target Start/End: Complemental strand, 21548554 - 21548245
Alignment:
Q  492 aaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcg 591  Q
    ||||| ||||||| |||||||||||||| |||||||||||| ||| |||||||||| ||||||||| | || ||||||||||||| || |||||||||||    
T  21548554 aaaattgcagagtcttgttgatcttcttcaggtcttcagctccttttataggcagggatttgagaggcgttggagaagagtgccagcacattaagagtcg 21548455  T
Q  592 ttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgt 691  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||   | |||| ||||||  ||||||||||| ||||| | |||||||| ||    
T  21548454 ttgagaagcttcaaatgaaggacgttgggccattgcctgatatggatattttcatcggatggtcattcaaaaatcctttgttgaaactggaagtatttgt 21548355  T
Q  692 tcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatccttgatagagacaactatagaagaca 791  Q
    |||||| |||||||||||||||  ||| | |||||||| |  |||| | |  |||| ||||||| ||| |||||||||||||||| ||||||||||||||    
T  21548354 tcattcatattgtccttgaagtcttttatctgtttctatatgtggtaaaaaaaagaaaaaactgcacttagatccttgatagagagaactatagaagaca 21548255  T
Q  792 ataaatctga 801  Q
    | ||||||||    
T  21548254 acaaatctga 21548245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 512 - 822
Target Start/End: Original strand, 29409481 - 29409791
Alignment:
Q  512 atcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaag 611  Q
    |||||||| ||||||| |||| ||| ||| || ||| ||||||||||| || || |||||||||| |  |||||||||| ||||||| ||||||||||||    
T  29409481 atcttcttaaggtctttagcttcttttattggtagggatttgagagacgttagaaaagagtgccagcgcattaagagtctttgagaaacttcaaatcaag 29409580  T
Q  612 gacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaa 711  Q
    ||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |  ||||||| |||||||||  ||| || | ||    
T  29409581 gacgtggggc-attgcatgatatggataattttgttggatagtcatttgaaaatcctttgctgaaattgaaagtatttgttcattctctttgcccctaaa 29409679  T
Q  712 gttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatcc-ttgatagagacaactatagaagacaataaatctgatgtgcagtt 810  Q
    |||||||||  |||||||||| |||||||| ||||||||||||| ||| |  ||| ||||| |||||||||||||||||| | |||||||||||| |||     
T  29409680 gttctttgtccgtttctacacgtggtcagaagaagacaaaactgtactcatttcctttgatggagacaactatagaagacgacaaatctgatgtggagtc 29409779  T
Q  811 tgagtccctcat 822  Q
    || |||||||||    
T  29409780 tgggtccctcat 29409791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 304 - 677
Target Start/End: Complemental strand, 22312221 - 22311850
Alignment:
Q  304 agagacttctatttgttaatagcaaatataaacaaacttattcttacatcatatatacaaaa-gttggtgtaaattgaacaatctttgaacaaactcttt 402  Q
    |||||||| |||||||| | | | ||||||||||||||| |||||||| || |||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  22312221 agagacttgtatttgtttacaacgaatataaacaaacttgttcttacaccagatatacaaaatgttggtgtaaactgaacaatctttgaacagactcttt 22312122  T
Q  403 aagacttttagggtttttaagatacaaaaattgaa-cgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcag 501  Q
    |||| || ||||  || |||| | ||||| ||||| | ||||| | ||||  |||| || ||||||||| |||||||||||| | || |||||||||||     
T  22312121 aagaattataggaattctaagtttcaaaagttgaaacaaaaattctaagttcttttacgctatttgatttggcagagtaatggcgcactaaaaatagcat 22312022  T
Q  502 agtattgttgatcttcttta-ggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagc 600  Q
    | | ||||  |||||||| | |||||||     |||||||||||||| |||||||||||||| |||||||||| || |  |||||||||| || | ||||    
T  22312021 attcttgtaaatcttcttcatggtcttc-----cttatataggcagggatttgagagacattggagaagagtgtcagcgcattaagagtcattcacaagc 22311927  T
Q  601 ttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaa 677  Q
    |||||||||||||| ||| ||||||||| |||||||||||||  ||||||| |||||| |||||||||||| |||||    
T  22311926 ttcaaatcaaggaccttgagccattgcccgatatggataattccgttggatcgtcattcgaaaatcctttgttgaaa 22311850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 304 - 768
Target Start/End: Original strand, 19564301 - 19564768
Alignment:
Q  304 agagacttctatttgttaatagcaaatataaacaaacttattcttacatcatatatacaaaagt--tggtgtaaattgaacaatctttgaacaaactctt 401  Q
    |||||||||| |||||| | | |||||||||| |||||  |||||||| || |||||||||  |  ||||||||| |||||||| | |||||||||||||    
T  19564301 agagacttctgtttgtttacaacaaatataaataaactatttcttacaccagatatacaaatttattggtgtaaactgaacaatatatgaacaaactctt 19564400  T
Q  402 taagacttttagggtttttaagatacaaaaattgaa-cgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagca 500  Q
     |  | |||||||  ||| |||||||| || || || ||||||||| ||||| || |||  ||||||||| ||||||||||||  || || |||||||||    
T  19564401 -atcaattttaggaatttgaagatacacaagtttaaacgaaaatcctaagtgcttatgcactatttgatttggcagagtaatggtaccgttaaaatagca 19564499  T
Q  501 gagtattgttgatcttcttta-ggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaag 599  Q
     | | ||||| ||||| || | ||| || |  | |||||||||||||| |||| |||||| || |||||||||||||    || |||||||||||||| |    
T  19564500 taatcttgttaatcttattcacggtgtttaaatccttatataggcagggatttaagagacgttggagaagagtgccagagcataaagagtcgttgagacg 19564599  T
Q  600 cttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattctt 699  Q
    ||| ||||||||||  ||| ||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||  ||||||||||    
T  19564600 cttaaaatcaaggatattgagccattgctagatatggataattatgttggatagtcattcgaaaatcctttgctgaaacaggaagtatatgttcattctt 19564699  T
Q  700 attgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatcctt 768  Q
    |||  |||||||||||||||| | |||| |||| ||| || | ||||| |||||||  || ||||||||    
T  19564700 atttcccttgaagttctttgtctatttccacacgtggacaaaagaagaaaaaactgtgctcagatcctt 19564768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 448 - 820
Target Start/End: Complemental strand, 21748819 - 21748450
Alignment:
Q  448 aagtgtttttgcggtatttgattcgg-cagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcag 546  Q
    ||||||||||||| |||||||||  | |||||||||| ||  |||||| ||| ||||||||||||||||||||||| ||||||||| ||| |||||| ||    
T  21748819 aagtgtttttgcgctatttgattttgacagagtaatggcatggtaaaa-tagaagagtattgttgatcttctttagatcttcagctccttttataggaag 21748721  T
Q  547 gaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgt 646  Q
    | ||| ||||||| || |||||||||| || |  ||||||||||||||| |||||||||||||||||||||||  |||||||| |||||||||||   ||    
T  21748720 ggattcgagagacgttagagaagagtgtcagcgaattaagagtcgttgaaaagcttcaaatcaaggacgttggatcattgcctaatatggataatcccgt 21748621  T
Q  647 tggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaag 746  Q
    || |||||||||||||| || |||||||||| | |||  |||  ||||||||  |||| ||||||||| |||||   ||||||||| |||||||| ||||    
T  21748620 tgaatagtcatttgaaattcatttgctgaaactggaataatttattcattctctttgtgcttgaagttatttgtcaatttctacacgtggtcagaagaag 21748521  T
Q  747 acaaaactgaactaagatccttgatagagacaactatagaagacaataaatctgatgtgcagtttgagtccctc 820  Q
    | |||| || | | || |||||||| ||    |||||||||||||| |||||||| ||| ||| || |||||||    
T  21748520 ataaaattgtattcaggtccttgattga---tactatagaagacaacaaatctgacgtggagtctgggtccctc 21748450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 439 - 677
Target Start/End: Complemental strand, 17417755 - 17417511
Alignment:
Q  439 gaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtatt------gttgatcttcttta-ggtcttcagc 531  Q
    |||||||  |||||||| |||| ||||| ||| |  |||||||||||||||| ||||||||||||||||      ||| |||||||| | ||||||||||    
T  17417755 gaaaatcttaagtgtttatgcgctatttaatttgatagagtaatgacacagttaaaatagcagagtattagcattgttaatcttcttcatggtcttcagc 17417656  T
Q  532 tacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctga 631  Q
    | ||||||||| || | ||||||||||| || ||||||||||||| |  || |||||| |||||||||||||| |||||||||||||  |||||| | ||    
T  17417655 tccttatatagacatggatttgagagacgttggagaagagtgccagcgcataaagagttgttgagaagcttcatatcaaggacgttgaaccattgac-ga 17417557  T
Q  632 tatggataattatgttggatagtcatttgaaaatcctttgctgaaa 677  Q
    |||| |||||||||| ||||||||||||||||| ||||||||||||    
T  17417556 tatgaataattatgtcggatagtcatttgaaaaccctttgctgaaa 17417511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 588 - 751
Target Start/End: Complemental strand, 16587261 - 16587098
Alignment:
Q  588 gtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtat 687  Q
    |||||||||||||||||||||||||| |||||| | ||| |||||||| |||||| |||||  ||| ||||||||| ||||||||  ||| ||||| |||    
T  16587261 gtcgttgagaagcttcaaatcaaggatgttgggtctttgtctgatatgaataattctgttgattagacatttgaaattcctttgcataaactagaattat 16587162  T
Q  688 tcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    || ||||||||  ||||||||||||||| |||| ||||| ||||  |||||||| |||||||||    
T  16587161 tctttcattctctttgtccttgaagttcattgtttgtttgtacatgtggtcagaagaagacaaa 16587098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 454 - 574
Target Start/End: Complemental strand, 26653656 - 26653537
Alignment:
Q  454 ttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttg 553  Q
    ||||||| |||| |||| | ||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||| |||||||||||||  |||||    
T  26653656 ttttgcgctattagatttgacagagtaatgacacagtaaaa-tagcagagtcttgttaatcttctttaagtcttcagctccttatataggcagtgatttg 26653558  T
Q  554 agagacatttgagaagagtgc 574  Q
    ||||||||| ||||| |||||    
T  26653557 agagacattggagaaaagtgc 26653537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 549 - 756
Target Start/End: Complemental strand, 27765809 - 27765602
Alignment:
Q  549 atttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttg 648  Q
    ||||||||||  || |||||||||| || | |||||||||||||||||||||||||||||||| || || || | ||| || ||||||||||| | ||||    
T  27765809 atttgagagatgttggagaagagtgtcatcgtattaagagtcgttgagaagcttcaaatcaagaacattaggtctttgtcttatatggataatgacgttg 27765710  T
Q  649 gatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagac 748  Q
      ||  ||||  ||| ||||||| ||||    ||| ||| ||||||||||   ||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  27765709 attatacattcaaaattcctttgttgaagccggaattatccgttcattctctctgtccttgaagttctttgtttgtttctacacgtggtcagaagaagac 27765610  T
Q  749 aaaactga 756  Q
    ||| ||||    
T  27765609 aaatctga 27765602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 439 - 752
Target Start/End: Original strand, 27315534 - 27315841
Alignment:
Q  439 gaaaatccaaagtgtttt-tgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttcttta-ggtcttcagctactt 536  Q
    |||||||| ||| ||||| |||| ||||||||| |||| |||||||||||| | ||||||||||||| |||||| || |||| | ||| |||| || |      
T  27315534 gaaaatcctaagcgttttatgcgctatttgatttggcaaagtaatgacacaattaaaatagcagagtcttgttggtcgtcttcatggttttcaactcc-- 27315631  T
Q  537 atataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatgg 636  Q
          | ||| ||||||||||| || | ||||||||  | |  || |||| | |||||||||||||| ||||||||||||   ||||  || |||||||    
T  27315632 ------gaagggatttgagagacgttggggaagagtgttagcgcataaagaatggttgagaagcttcagatcaaggacgttaaaccatcaccagatatgg 27315725  T
Q  637 ataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatgg 736  Q
    ||||||  ||||||||||||||  ||||||| |||||||||   |||||||  |||||||||| |||||  ||||||  ||||| | |||||||||||||    
T  27315726 ataattcagttggatagtcattcaaaaatccgttgctgaaacaggaagtatctgttcattcttcttgtctatgaagtcatttgtctatttctacacatgg 27315825  T
Q  737 tcagatgaagacaaaa 752  Q
    ||||| ||||||||||    
T  27315826 tcagaagaagacaaaa 27315841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 681 - 846
Target Start/End: Original strand, 21578078 - 21578244
Alignment:
Q  681 gaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatcc-ttgatagagacaa 779  Q
    ||||||| | ||||||||||||||||||||||||||||    |||||||||| |||||||| ||||| ||||||| ||| |||||| ||||| ||||  |    
T  21578078 gaagtatccattcattcttattgtccttgaagttcttttctggtttctacacgtggtcagacgaagaaaaaactgtactcagatcctttgatggagaaca 21578177  T
Q  780 ctatagaagacaataaatctgatgtgcagtttgagtccctcatggtcttccgaagtctgaaggtctt 846  Q
    | ||||||||||| |||| ||| | | ||| |  ||| |||| | ||||| ||||||||||||||||    
T  21578178 caatagaagacaacaaatatgacgcggagtctcggtctctcaggttcttctgaagtctgaaggtctt 21578244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 581 - 805
Target Start/End: Complemental strand, 16917580 - 16917355
Alignment:
Q  581 attaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaata 680  Q
    ||||||||||||||||||| ||||||||| ||| ||| |  | |||| ||||||| |||| |  ||||  ||| ||||||||| ||||||||||||| |     
T  16917580 attaagagtcgttgagaagattcaaatcacggatgttagaactttgcatgatatgtataaattcgttgattagacatttgaaattcctttgctgaaactg 16917481  T
Q  681 gaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaacta--agatccttgatagagaca 778  Q
     |||||| || |||||||  ||||||||||| ||| |||| ||| ||||||| |||||| | ||||| |||| || ||||  |||  |||||||| ||||    
T  16917480 aaagtatccgatcattctctttgtccttgaaattccttgtttgtatctacacgtggtcaaaagaaga-aaaattgtactatcagagtcttgatagcgaca 16917382  T
Q  779 actatagaagacaataaatctgatgtg 805  Q
    |||| | ||||  | ||||||||||||    
T  16917381 actacataagaagaaaaatctgatgtg 16917355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 581 - 751
Target Start/End: Complemental strand, 19878231 - 19878061
Alignment:
Q  581 attaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaata 680  Q
    |||||||||||||||||||| || |||||||||  |||||  ||| |||||||||||||||   ||||  |||  |||||||| ||||||| |  || ||    
T  19878231 attaagagtcgttgagaagcatctaatcaaggagtttgggatatttcctgatatggataatgtcgttgattagatatttgaaattcctttgtttcaacta 19878132  T
Q  681 gaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    ||| ||| | |||||| |  ||||||||||| || ||||| ||||||| |||||||||||| || ||||||    
T  19878131 gaattatccattcattatctttgtccttgaatttttttgtctgtttctccacatggtcagaagatgacaaa 19878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 500 - 682
Target Start/End: Complemental strand, 22132498 - 22132317
Alignment:
Q  500 agagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaag 599  Q
    ||||| |||||||||||||| |||||||||||| ||||||| |  ||  | ||||||||| || |||||||| | || | ||   | |||||||||||||    
T  22132498 agagtcttgttgatcttcttcaggtcttcagctccttatattgctagtcaattgagagacgttggagaagagagtcagcctaaatatagtcgttgagaag 22132399  T
Q  600 cttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaataga 682  Q
    |||| ||||||| ||||||| || |||| ||||||| ||||||  |||| |||||| ||||||  ||||||| ||||| ||||    
T  22132398 cttc-aatcaagaacgttggtcctttgcttgatatgaataattcagttgaatagtcctttgaatttcctttggtgaaagtaga 22132317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 440 - 573
Target Start/End: Complemental strand, 26655000 - 26654869
Alignment:
Q  440 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttata 539  Q
    ||||||| ||||||||| | | |||| |||| | ||||||||||||||| ||||| || || ||| |||||||||||||| ||||||||| || ||||||    
T  26655000 aaaatcctaagtgtttt-gtgctattagatttgacagagtaatgacacactaaaa-taacatagtcttgttgatcttcttcaggtcttcaactccttata 26654903  T
Q  540 taggcaggaatttgagagacatttgagaagagtg 573  Q
    |||||||  ||||||||||| || ||||| ||||    
T  26654902 taggcagtgatttgagagacgttggagaaaagtg 26654869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 455 - 578
Target Start/End: Complemental strand, 16197760 - 16197637
Alignment:
Q  455 tttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgat-cttctttaggtcttcagctacttatataggcaggaatttg 553  Q
    |||||| ||||||||| | ||||||  |||||||| |||||||||||||| |||||| | |||||||||||||||| || ||| ||||| |||  |||||    
T  16197760 tttgcgctatttgatttgacagagttttgacacag-aaaaatagcagagtcttgttgcttcttctttaggtcttcatcttcttttatagacagtgatttg 16197662  T
Q  554 agagacatttgagaagagtgccaac 578  Q
    |||||| || ||||| |||||||||    
T  16197661 agagacgttcgagaatagtgccaac 16197637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 474 - 662
Target Start/End: Complemental strand, 26653427 - 26653241
Alignment:
Q  474 cagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtg 573  Q
    ||||||||||| ||||||||  ||||||||| ||||| |||||||||| |||| ||||| |||||||||| ||  |||||||| || || ||||| |||     
T  26653427 cagagtaatgagacagtaaag-tagcagagtcttgttaatcttctttaagtctccagctccttatataggtagtgatttgagatacgttggagaaaagtt 26653329  T
Q  574 ccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaa 662  Q
    | | |  |   ||||||||||||||| || || ||||| ||||||| || || ||||||||||||||||  |||| |||||| ||||||    
T  26653328 ctatcgcaaatagagtcgttgagaagatttaa-tcaagaacgttggcccttttcctgatatggataattccgttgaatagtcctttgaa 26653241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 581 - 642
Target Start/End: Complemental strand, 45622056 - 45621995
Alignment:
Q  581 attaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataatt 642  Q
    |||||||||| |||||||| ||| ||||||||| |||| | |||||||||||||||||||||    
T  45622056 attaagagtctttgagaagtttccaatcaaggatgttgaggcattgcctgatatggataatt 45621995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 731
Target Start/End: Complemental strand, 35666326 - 35666088
Alignment:
Q  490 taaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagag-tgccaacatattaagag 588  Q
    ||||||||||||||| |||||| | ||||| |  || | |||| ||||||||| || | ||||||||||| ||   |||||| |  || | |||||||||    
T  35666326 taaaaatagcagagtcttgttgttgttcttcaaatcgttagctccttatatagacaaggatttgagagacgtt---gaagaggttacatcgtattaagag 35666230  T
Q  589 tcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtatt 688  Q
    |||||||||| |||| |||||||||| | |||  ||||||| ||||||||||| |  |||  ||| ||||||||| ||||||| || ||   ||| |||     
T  35666229 tcgttgagaaacttc-aatcaaggacatcgggatattgcctcatatggataatgacattgattagacatttgaaattcctttgttgcaacaggaattatc 35666131  T
Q  689 cgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    ||||  ||||  || ||||||||||||||||| | ||||||||    
T  35666130 cgttagttctctttttccttgaagttctttgtctatttctaca 35666088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 681 - 752
Target Start/End: Complemental strand, 22311655 - 22311584
Alignment:
Q  681 gaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaa 752  Q
    ||||||| |||||||| |||||| |||||||||||||||| | ||||||||| |||||| |  |||||||||    
T  22311655 gaagtatacgttcatttttattgcccttgaagttctttgtctttttctacacgtggtcaaaataagacaaaa 22311584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 753
Target Start/End: Complemental strand, 24764592 - 24764501
Alignment:
Q  662 aaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaac 753  Q
    |||||||||| |||||   |||||||  | ||||||||||||  ||||||||||||||  ||||||||||  || ||||| |||||||||||    
T  24764592 aaatcctttgttgaaacaggaagtatcagatcattcttattgcgcttgaagttctttgactgtttctacatgtgatcagaagaagacaaaac 24764501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 749
Target Start/End: Complemental strand, 28449537 - 28449478
Alignment:
Q  690 gttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagaca 749  Q
    |||||||||  |||||||| |||||||||||  |||||||||| |||||||| |||||||    
T  28449537 gttcattctctttgtcctttaagttctttgttggtttctacacgtggtcagaagaagaca 28449478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 752
Target Start/End: Original strand, 42256213 - 42256384
Alignment:
Q  581 attaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaata 680  Q
    ||||||| |||||||||||||||| ||||| |||||| |   |||   || ||||||||||    |||  ||| ||||||||| |||||| ||| || ||    
T  42256213 attaagattcgttgagaagcttcacatcaaagacgttagaatattatatggtatggataatatcattgattagacatttgaaattcctttactgcaatta 42256312  T
Q  681 gaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaa 752  Q
    ||| ||  ||||||||| | |||| ||||||||||||||| ||| ||| ||| |||| | | ||||||||||    
T  42256313 gaattacccgttcattccttttgtacttgaagttctttgtttgtatctgcacgtggttacaagaagacaaaa 42256384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45572356 - 45572270
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45572356 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45572270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45576023 - 45575937
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45576023 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45575937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45579690 - 45579604
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45579690 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45579604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45583357 - 45583271
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45583357 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45583271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45587024 - 45586938
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45587024 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45586938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45590691 - 45590605
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45590691 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45590605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45594358 - 45594272
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45594358 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45594272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45598025 - 45597939
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45598025 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45597939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45601692 - 45601606
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45601692 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45601606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45605359 - 45605273
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45605359 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45605273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45609026 - 45608940
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45609026 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45608940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45612693 - 45612607
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45612693 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45612607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 645 - 731
Target Start/End: Complemental strand, 45616360 - 45616274
Alignment:
Q  645 gttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||| |||||||||||||| ||||||||||||| | ||| | | ||||||||||  ||||| |||||  |||||||  |||||||||    
T  45616360 gttgaatagtcatttgaaattcctttgctgaaactggaattgtccgttcattctctttgtcattgaacgtctttgtccgtttctaca 45616274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 559
Target Start/End: Complemental strand, 16587363 - 16587275
Alignment:
Q  468 attcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagac 559  Q
    ||||||||||||||||||||| | || |||||| ||| ||||||   ||| | | ||||||| || |||||||||||| | |||||||||||    
T  16587363 attcggcagagtaatgacacaattaacatagcacagtcttgttg---ttcgtcaagtcttcaacttcttatataggcaaggatttgagagac 16587275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 21548964 - 21548879
Alignment:
Q  167 tcaatgactcttccaaaagactt-ctaacgctcaaacacacttgtaaaagacttctaatgctcaagatcactaccaagagacttcc 251  Q
    |||||||||||||||| |||||| | || |||||| |||||||| |  |||||| |||| |||||| | |||||||||||| ||||    
T  21548964 tcaatgactcttccaagagactttcaaatgctcaagcacacttgcaggagacttataattctcaaggtaactaccaagagatttcc 21548879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 3e-90; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 304 - 846
Target Start/End: Original strand, 22974933 - 22975476
Alignment:
Q  304 agagacttctatttgttaatagcaaatataaacaaacttattcttacatcatatatacaaaagttggtgtaaattgaacaatctttgaacaaactcttta 403  Q
    ||||||||||| ||||| | || |||||||||||||||| || || || || ||| ||||  ||||||||||| | || |||||||||||| ||||||||    
T  22974933 agagacttctacttgtttacagaaaatataaacaaacttgtttttgcaccagataaacaattgttggtgtaaactaaataatctttgaacagactcttta 22975032  T
Q  404 agacttttagggtttttaagatacaaaaattgaa-cgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcaga 502  Q
    ||| ||||||| |||| ||| ||||||| ||||| |||||||   ||||||||||||| ||| ||||| || ||||||||||||| | |||||||||| |    
T  22975033 agaattttaggatttt-aagttacaaaagttgaaacgaaaattttaagtgtttttgcgttatatgatttggtagagtaatgacacggaaaaaatagcaaa 22975131  T
Q  503 gtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagctt 602  Q
    || ||||| ||||| || ||||||| |  | |||||||||||||  ||||||||||  || ||||||||| |||||| |||||||| |||||||||||||    
T  22975132 gtcttgttaatctttttcaggtctttaattccttatataggcagagatttgagagatgttggagaagagttccaacacattaagagccgttgagaagctt 22975231  T
Q  603 caaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttatt 702  Q
    |||||||||||||||| | |||||| |||||||||||| | | || ||||||||||  |||||||||||||||||   |||||||  |||||||||||||    
T  22975232 caaatcaaggacgttgagtcattgcatgatatggataaatctatttgatagtcattcaaaaatcctttgctgaaacaggaagtatctgttcattcttatt 22975331  T
Q  703 gtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatc-cttgatagagacaactatagaagacaataaatctga 801  Q
    | ||||||| |||||||| ||||||||||  |||| ||| ||||| |||||    || |||||  |||||   |||| ||||||||||| | ||||||||    
T  22975332 gcccttgaaattctttgtctgtttctacatgtggttagaagaagataaaacaatgcttagatcatttgatgtggacagctatagaagacgaaaaatctga 22975431  T
Q  802 tgtgcagtttgagtccctcatggtcttccgaagtctgaaggtctt 846  Q
     ||| ||| ||||||||||| | ||||| || || ||||||||||    
T  22975432 cgtggagtctgagtccctcaggttcttctgaggtttgaaggtctt 22975476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 492 - 787
Target Start/End: Complemental strand, 1777332 - 1777038
Alignment:
Q  492 aaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcg 591  Q
    ||||||||||||| |||||||| ||||| || ||||||||| |||||||||| ||| ||||||||||| || |||||||||| ||||| |||| ||||||    
T  1777332 aaaatagcagagtcttgttgattttcttcagatcttcagctccttatataggtagggatttgagagacgttggagaagagtgtcaacacattatgagtcg 1777233  T
Q  592 ttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgt 691  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||    || || |||||||| |||||||||||||||| | ||||||  | |    
T  1777232 ttgagaagcttcaaatcaaggacgttgggccattgactaatatggataatttcaatgaatggtcatttg-aaatcctttgctgaaactggaagtacccct 1777134  T
Q  692 tcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatccttgatagagacaactatagaa 787  Q
    |||||||  |||||||||||||||||||| ||| | ||||| |||||||| |||||||||| || ||| |||||||||||||||||| ||||||||    
T  1777133 tcattctctttgtccttgaagttctttgtctgtgtttacacgtggtcagaagaagacaaaattgtacttagatccttgatagagacatctatagaa 1777038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 464 - 739
Target Start/End: Complemental strand, 17891644 - 17891370
Alignment:
Q  464 tttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacattt 563  Q
    ||||||| | |||||||| |||||||| || ||| |||||| |||||| | ||||| | ||||||| || |||||||| ||| | ||||||||||| ||     
T  17891644 tttgatttgacagagtaaagacacagttaatatatcagagtcttgttgttgttcttcaagtcttcaactccttatataagcaaggatttgagagacgttg 17891545  T
Q  564 gagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaa 663  Q
    |||||||||| ||||  ||||||||||  ||||||||||||||||||||| ||||||||||| |||||||||||||||  |||||  ||| |||||||||    
T  17891544 gagaagagtgtcaacgcattaagagtcactgagaagcttcaaatcaaggatgttgggccattacctgatatggataatgttgttgattagacatttgaaa 17891445  T
Q  664 atcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtca 739  Q
     ||||||||||||  | ||| ||| | |||||| |  ||||||||||| |||||||| ||||||||||| ||||||    
T  17891444 ttcctttgctgaac-tggaattatccattcattatctttgtccttgaaattctttgtttgtttctacacgtggtca 17891370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 583 - 731
Target Start/End: Complemental strand, 10646947 - 10646799
Alignment:
Q  583 taagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaataga 682  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||   ||||  ||| ||||||||| |||||| ||| || | ||    
T  10646947 taagagtcattgagaagcttcaaatcaaggatgttgggtcattgcctgttatggataatgtcgttgattagacatttgaaattccttttctgtaactgga 10646848  T
Q  683 agtattcgttcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    | |||| |||||||||  |||||||||||||||||||| ||||||||||    
T  10646847 attatttgttcattctctttgtccttgaagttctttgtttgtttctaca 10646799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 464 - 741
Target Start/End: Original strand, 32957410 - 32957687
Alignment:
Q  464 tttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacattt 563  Q
    ||||||| | || ||||| |||||| | ||||||| ||||| |||||  | ||||| | |||||| ||| |||||||||||| | |  | |||||| ||     
T  32957410 tttgatttgacaaagtaaggacacaattaaaatagtagagtcttgttattgttcttcaagtcttctgcttcttatataggcaaggaaataagagacgttg 32957509  T
Q  564 gagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaa 663  Q
    |||||||||| || |  ||| ||||||| | ||||||||||||||||  | |||||| ||||| ||||||||||||||   ||||  ||| |||| ||||    
T  32957510 gagaagagtgtcagcgcatttagagtcgctaagaagcttcaaatcaataatgttgggtcattgtctgatatggataatgtcgttgattagacattcgaaa 32957609  T
Q  664 atcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcaga 741  Q
     ||||||||||||| | ||| |||  ||||||| |  |||||||||||||||||||| ||||||||||  ||||||||    
T  32957610 ttcctttgctgaaactggaattatctgttcattatctttgtccttgaagttctttgtttgtttctacatgtggtcaga 32957687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 448 - 747
Target Start/End: Original strand, 26822118 - 26822418
Alignment:
Q  448 aagtgtttttgcggtatttgattcgg-cagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcag 546  Q
    ||||| ||||||| |||||||||  | ||||||||||||||| ||||| ||| ||||| |||||| | ||||| | ||||||| || |||||||||| |     
T  26822118 aagtgcttttgcgctatttgattttgacagagtaatgacacaataaaa-tagtagagtcttgttgttattcttcaagtcttcaactccttatataggtaa 26822216  T
Q  547 gaatttgagagacatttgagaagag-tgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatg 645  Q
      ||||||||||  || ||||| |  || || || ||||| ||||||||| || |||||||||||| | ||||  || |||||||||||||||| || ||    
T  26822217 agatttgagagatgttggagaacaaatgtcagcacattaaaagtcgttgaaaaacttcaaatcaagaatgttgaccctttgcctgatatggatagttctg 26822316  T
Q  646 ttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaa 745  Q
    |||| ||| ||||||||| |||||| |  ||    ||| ||| | ||| ||||  |||||||||||||||||||| ||||||||||||| || ||| |||    
T  26822317 ttggttagccatttgaaattcctttacaaaatcaggaattatccattcgttctctttgtccttgaagttctttgtttgtttctacacatagtgagaagaa 26822416  T
Q  746 ga 747  Q
    ||    
T  26822417 ga 26822418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 523 - 751
Target Start/End: Complemental strand, 27707551 - 27707324
Alignment:
Q  523 gtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggcc 622  Q
    |||||||||| ||||||| |||| | ||||||||| | || ||||||||||   |   ||||||||||||||||||||||||||||||| | |||||  |    
T  27707551 gtcttcagctccttatatgggcaaggatttgagagtcgttggagaagagtgttgatgcattaagagtcgttgagaagcttcaaatcaagaaagttggatc 27707452  T
Q  623 attgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtat 722  Q
     |||||||||||||||| ||   |||  ||| ||||||||| ||| ||||| ||| |  || |||  ||| |||||| ||||| |||||||||||||| |    
T  27707451 tttgcctgatatggatagttccattgattagacatttgaaattcc-ttgctaaaactgaaattatcagtttattctttttgtctttgaagttctttgttt 27707353  T
Q  723 gtttctacacatggtcagatgaagacaaa 751  Q
    |||||||||  |||||||| || ||||||    
T  27707352 gtttctacatgtggtcagaagaggacaaa 27707324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 513 - 676
Target Start/End: Complemental strand, 48358339 - 48358177
Alignment:
Q  513 tcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaagg 612  Q
    ||||||| | |||||||||| |||||||| ||||  ||||||||  |||| |||||||||||||   ||   ||||||||||||||||||||| |||||     
T  48358339 tcttcttaatgtcttcagctccttatatatgcagtcatttgagatgcattggagaagagtgccagtgtaaatagagtcgttgagaagcttcaa-tcaaga 48358241  T
Q  613 acgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaa 676  Q
    ||||||| || |||||||||||||||||||  |||| |||||| ||||||  ||||||| ||||    
T  48358240 acgttggccctttgcctgatatggataattccgttgaatagtcctttgaatttcctttgttgaa 48358177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 485 - 751
Target Start/End: Original strand, 1782840 - 1783106
Alignment:
Q  485 cacagtaaaaatagcagagtat--tgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatat 582  Q
    |||||||||||||||||||| |  ||||  | ||||| | |||||||||| |||||||||| | ||||||||||| | || || || |||| || || ||    
T  1782840 cacagtaaaaatagcagagtctcttgttattgttcttcaagtcttcagctccttatataggaaagaatttgagagtcgtt-gaaaa-agtgtcagcacat 1782937  T
Q  583 taagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaataga 682  Q
    |||||||||  |||||| ||||||||||||| |||  ||||||| | |||||||| |||   ||||  ||| ||||||||| |||||| ||  ||   ||    
T  1782938 taagagtcgaagagaagtttcaaatcaaggatgtttagccattgtcggatatggacaatgtcgttgattagacatttgaaattcctttactacaacggga 1783037  T
Q  683 agtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    | ||| ||||||||||  |||| ||||||||||||||| | ||| ||||| |||||||| || ||||||    
T  1783038 attatccgttcattctctttgttcttgaagttctttgtttatttttacacgtggtcagaagaggacaaa 1783106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 615
Target Start/End: Original strand, 19142098 - 19142223
Alignment:
Q  490 taaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagt 589  Q
    ||||||||||||||| |||||  | ||||| | ||||||| ||  |||||| | || | || |||||||| || |||||||||||||||  ||| |||||    
T  19142098 taaaaatagcagagtcttgttattattcttcaagtcttcaactcattatattgacaaggatatgagagacgttggagaagagtgccaacggatttagagt 19142197  T
Q  590 cgttgagaagcttcaaatcaaggacg 615  Q
    |||||  |||| ||||||||||||||    
T  19142198 cgttggaaagcatcaaatcaaggacg 19142223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 615
Target Start/End: Original strand, 20741497 - 20741622
Alignment:
Q  490 taaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagt 589  Q
    ||||||||||||||| |||||  | ||||| | ||||||| ||  |||||| | || | || |||||||| || |||||||||||||||  ||| |||||    
T  20741497 taaaaatagcagagtcttgttattattcttcaagtcttcaactcattatattgacaaggatatgagagacgttggagaagagtgccaacggatttagagt 20741596  T
Q  590 cgttgagaagcttcaaatcaaggacg 615  Q
    |||||  |||| ||||||||||||||    
T  20741597 cgttggaaagcatcaaatcaaggacg 20741622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 22974677 - 22974761
Alignment:
Q  167 tcaatgactcttccaaaagacttct-aacgctcaaacacacttgtaaaagacttctaatgctcaagatcactaccaagagacttc 250  Q
    |||| ||||| ||||| |||||||| || |||||| || ||||| |  |||||||||||||||||| ||||||||||||||||||    
T  22974677 tcaaggactcgtccaagagacttctcaatgctcaagcatacttgcaggagacttctaatgctcaaggtcactaccaagagacttc 22974761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 44806928 - 44806967
Alignment:
Q  126 aaaagggtttgtctaatatgttcaatattacacatgttaa 165  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  44806928 aaaagggtttgtctaatatgtgcaatattacacatgttaa 44806967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 751
Target Start/End: Original strand, 12733628 - 12733694
Alignment:
Q  685 tattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    ||||||||||||||| |||||||||||||||||||| ||| ||| || ||  ||||| |||||||||    
T  12733628 tattcgttcattctttttgtccttgaagttctttgtttgtatctgcaaataatcagaagaagacaaa 12733694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 589 - 641
Target Start/End: Original strand, 5265193 - 5265245
Alignment:
Q  589 tcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataat 641  Q
    |||||||||||||| |||||||||||||||||  |||| || |||||||||||    
T  5265193 tcgttgagaagctttaaatcaaggacgttgggatattgtctaatatggataat 5265245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 1e-83; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 440 - 752
Target Start/End: Complemental strand, 6999235 - 6998922
Alignment:
Q  440 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttcttta-ggtcttcagctacttat 538  Q
    ||||||| |||||||| |||  ||||||||| ||||||||||||||||| | ||||||||||||| ||||| |||||||| | ||||||| ||| |||||    
T  6999235 aaaatcctaagtgtttatgcactatttgatttggcagagtaatgacacatttaaaatagcagagtcttgttaatcttcttcatggtcttctgctccttat 6999136  T
Q  539 ataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggat 638  Q
    ||||||||| ||||||||||| || |||||||||||||||| || |||||||||||||||| |||||||||||||||||| ||||||||| |||||| ||    
T  6999135 ataggcagggatttgagagacgttggagaagagtgccaacacataaagagtcgttgagaagtttcaaatcaaggacgttgagccattgccagatatgtat 6999036  T
Q  639 aattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtc 738  Q
    ||||  ||||||||||||||  |||||| ||||||||||   |||||||  |||||||||||||| |||| | ||||||| ||||||||||||| |||||    
T  6999035 aatttcgttggatagtcattcaaaaatcatttgctgaaacatgaagtatatgttcattcttattgcccttaaggttctttatatgtttctacacgtggtc 6998936  T
Q  739 agatgaagacaaaa 752  Q
    ||| ||||||||||    
T  6998935 agaagaagacaaaa 6998922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 472 - 823
Target Start/End: Complemental strand, 24492712 - 24492361
Alignment:
Q  472 ggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagag 571  Q
    |||||||||||  |||||||||| ||| ||||| |||||||||||||| |||| |||| || ||| |||||||||| ||||||||||| || ||||||||    
T  24492712 ggcagagtaatagcacagtaaaa-tagtagagtcttgttgatcttcttcaggtattcaactccttttataggcagggatttgagagacgttcgagaagag 24492614  T
Q  572 tgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttg 671  Q
    || ||    ||||||| |||||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  24492613 tgtcattgcattaagaatcgttgagaaacatcaaatcaaggacgttgggccatcgcctgatatggataattctgttggatagtcattcgaaaatcctttg 24492514  T
Q  672 ctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatcc-ttga 770  Q
    |||||| | |||||||    |||||||  |||||||| ||||||||||| ||||||||||| |||| ||| ||||||||||||  ||| | |||| ||||    
T  24492513 ctgaaactggaagtatctaatcattctatttgtcctttaagttctttgtctgtttctacacgtggttagaagaagacaaaactatactcatatcctttga 24492414  T
Q  771 tagagacaactatagaagacaataaatctgatgtgcagtttgagtccctcatg 823  Q
     ||||||||||||||||||||| |||||| ||||| |||||| ||||||||||    
T  24492413 cagagacaactatagaagacaacaaatctaatgtggagtttgtgtccctcatg 24492361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 477 - 782
Target Start/End: Complemental strand, 30608534 - 30608224
Alignment:
Q  477 agtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgcca 576  Q
    ||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||  || |||||||||| |||||||||||  | |||||||||| ||    
T  30608534 agtaatgacacggtaaaaatagcagagtcttgttgatcttcttcaggtcttcagctcattttataggcagggatttgagagacgatggagaagagtgtca 30608435  T
Q  577 acatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatccttt-----g 671  Q
     |  ||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||  |||| ||| |||||||||| ||||||     |    
T  30608434 tcgcattaagagttgttgagaagtttcaaatcaaggacgttggaccatttcctgatatggataattccgttgaatattcatttgaaattcctttgcttag 30608335  T
Q  672 ctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatccttgat 771  Q
    || ||| |  || ||| ||||||||||  |||||| |||||||||||||   ||||||||  | |||||| ||| ||||||||| ||| |||||||||||    
T  30608334 cttaaactcaaattatccgttcattctctttgtccatgaagttctttgtccatttctacatgttgtcagaagaaaacaaaactgtactcagatccttgat 30608235  T
Q  772 agagacaacta 782  Q
    ||||| |||||    
T  30608234 agagataacta 30608224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 454 - 751
Target Start/End: Original strand, 26013527 - 26013824
Alignment:
Q  454 ttttgcggtatttgattc-ggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaattt 552  Q
    ||||||| |||||||||  ||||||||||||||||||||||| ||||||||| || ||  | ||||| ||  ||||| || ||| |||| ||| | ||||    
T  26013527 ttttgcgctatttgattttggcagagtaatgacacagtaaaa-tagcagagtcttattatttttcttcagaacttcaactccttctataagcaaggattt 26013625  T
Q  553 gagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggata 652  Q
    || |||| || |||||   || || | ||||||||||| |||||||||||||||||||| | ||||| || |||| |||||  |||| ||  ||||| ||    
T  26013626 gaaagacgttggagaaatatgtcagcgtattaagagtcattgagaagcttcaaatcaagaatgttggtcctttgcttgatacagatagttccgttggcta 26013725  T
Q  653 gtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    | ||||||||| |||||||| ||||   ||| ||| ||||  ||||  || ||||||||||||||||| |||||||||||||||||||| |||||||||    
T  26013726 gacatttgaaattcctttgcagaaacaggaattatccgtttgttctctttttccttgaagttctttgtttgtttctacacatggtcagaagaagacaaa 26013824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 477 - 747
Target Start/End: Original strand, 22825967 - 22826236
Alignment:
Q  477 agtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgcca 576  Q
    ||||||| |||| ||||||||||||||| |||||  | ||||| | | |||||||| |||||||||||| | |||||| |||  |||||||||| || ||    
T  22825967 agtaatggcacaataaaaatagcagagtgttgttattgttcttcaagccttcagctccttatataggcaaggatttgaaagatgtttgagaagaatgtca 22826066  T
Q  577 acatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctg--atatggataattatgttggatagtcatttgaaaatcctttgctg 674  Q
     |  ||||||||||||||||||| ||||||||||| |||||   || ||| |||  |||| ||||||| |||||  ||| ||||||||| |||||||| |    
T  22826067 gcgcattaagagtcgttgagaagtttcaaatcaagaacgttaaccctttgtctgatatattgataattctgttgattagacatttgaaattcctttgcag 22826166  T
Q  675 aaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaaga 747  Q
    ||    ||| ||| ||||||||||  ||||||||||| || ||||| ||||||||||| |||||||| |||||    
T  22826167 aa---ggaattatccgttcattctatttgtccttgaatttttttgtttgtttctacacgtggtcagaagaaga 22826236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 472 - 732
Target Start/End: Complemental strand, 24838645 - 24838384
Alignment:
Q  472 ggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagag 571  Q
    |||||||||| | |||| | ||||||||||| | |||||  |  |||| |||||||||||| ||||||||||||   ||||||||||| || |||| ||     
T  24838645 ggcagagtaagggcacaattaaaatagcagattcttgttattactcttaaggtcttcagctccttatataggcaaagatttgagagacgttggagaggaa 24838546  T
Q  572 tgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccatt-gcctgatatggataattatgttggatagtcatttgaaaatccttt 670  Q
    || ||||  |||||||| | | ||||||||||||||||||||||||||| ||||   ||||||||||||||| |||||   ||  |||||||| ||| ||    
T  24838545 tgacaacgcattaagagacatcgagaagcttcaaatcaaggacgttgggtcattcatctgatatggataattctgttgataagaaatttgaaattccatt 24838446  T
Q  671 gctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacac 732  Q
    |  |||| | ||| ||| | |||||  |  |||||||||||||||||||| ||||| |||||    
T  24838445 gtagaaactggaattatccattcatcatgtttgtccttgaagttctttgtttgtttatacac 24838384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 581 - 738
Target Start/End: Original strand, 37336564 - 37336721
Alignment:
Q  581 attaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaata 680  Q
    |||||||||| |||||||| ||||||||||| ||||||  || ||| |||||||||||| || |  ||  ||| ||||||||| |||||||| ||||       
T  37336564 attaagagtcattgagaagtttcaaatcaagaacgttgaccctttgtctgatatggatagttctaatgattagacatttgaaattcctttgcagaaacat 37336663  T
Q  681 gaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtc 738  Q
    ||| ||| ||||||||||  |||||||||||||||||||| ||||||||||| |||||    
T  37336664 gaattatccgttcattctctttgtccttgaagttctttgtttgtttctacacgtggtc 37336721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 523 - 617
Target Start/End: Complemental strand, 25936446 - 25936354
Alignment:
Q  523 gtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgtt 617  Q
    |||||||||| |||||||||||| | ||||||||||| || ||||   ||||||||  |||||||||| ||||||||| ||||||||| ||||||    
T  25936446 gtcttcagctccttatataggcaaggatttgagagacgttggaga--ggtgccaacgcattaagagtccttgagaagcatcaaatcaaagacgtt 25936354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 5958308 - 5958267
Alignment:
Q  125 aaaaagggtttgtctaatatgttcaatattacacatgttaaa 166  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  5958308 aaaaagggtttgtctaacatgtgcaatattacacatgttaaa 5958267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 691 - 751
Target Start/End: Original strand, 16791264 - 16791324
Alignment:
Q  691 ttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    |||||||  |||||||||||||||| ||||  |||||||||||||||||||  ||||||||    
T  16791264 ttcattccaattgtccttgaagttcattgtccgtttctacacatggtcagaaaaagacaaa 16791324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 462 - 573
Target Start/End: Complemental strand, 19569896 - 19569785
Alignment:
Q  462 tatttgattcggcagagtaatgacacagtaaaaatagcagagtattgtt-gatcttctttaggtcttcagctacttatataggcaggaatttgagagaca 560  Q
    ||||||||| | ||||||||||||||||| ||||||| ||||| |||||   |||| || ||||||||| || |||||||||| ||  |||||||||||     
T  19569896 tatttgatttgacagagtaatgacacagt-aaaatagtagagtcttgttacttctttttcaggtcttcaacttcttatataggtagtgatttgagagacg 19569798  T
Q  561 tttgagaagagtg 573  Q
    ||  |||||||||    
T  19569797 ttgaagaagagtg 19569785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 655 - 751
Target Start/End: Complemental strand, 26335660 - 26335564
Alignment:
Q  655 catttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    ||||||||| |||||||||| || | ||| ||| ||||||||  | |||||||||| ||||||| | ||| ||| |||||||||||| || ||||||    
T  26335660 catttgaaattcctttgctgcaactggaattatccgttcatttcttttgtccttgaggttctttatttgtatctgcacatggtcagaagaggacaaa 26335564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 739
Target Start/End: Original strand, 27499738 - 27499893
Alignment:
Q  584 aagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaa 683  Q
    |||||||||||| ||| ||||||||||||||  ||   ||||  ||||||||||||||  |||||| ||| || |||||| || ||| ||  || |  ||    
T  27499738 aagagtcgttgaaaagtttcaaatcaaggacactgatacattttctgatatggataatactgttggttagacaattgaaattcatttactccaactgaaa 27499837  T
Q  684 gtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtca 739  Q
     ||| ||||||||||  || || |||||||| ||||| ||||||||||| ||||||    
T  27499838 ttatccgttcattctctttatctttgaagttatttgtctgtttctacacgtggtca 27499893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 11636724 - 11636766
Alignment:
Q  124 taaaaagggtttgtctaatatgttcaatattacacatgttaaa 166  Q
    |||||||||||||||||| |||| ||||||| |||||||||||    
T  11636724 taaaaagggtttgtctaacatgtgcaatattgcacatgttaaa 11636766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 453 - 578
Target Start/End: Complemental strand, 21391534 - 21391409
Alignment:
Q  453 tttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgat-cttctttaggtcttcagctacttatataggcaggaatt 551  Q
    |||||||| |||||||||   ||||||  || ||||| |||||||||||||| |||||| | |||||| ||||| |||||| | | ||||||||   | |    
T  21391534 tttttgcgctatttgatttaacagagttgtggcacag-aaaaatagcagagtcttgttgcttcttcttcaggtcgtcagctccatttataggcaatgact 21391436  T
Q  552 tgagagacatttgagaagagtgccaac 578  Q
    |||||||| || |||||||||||||||    
T  21391435 tgagagacgttggagaagagtgccaac 21391409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 431
Target Start/End: Complemental strand, 24494908 - 24494848
Alignment:
Q  370 gtgtaaattgaacaatctttgaacaaactctttaagacttttagggtttttaagatacaaaa 431  Q
    ||||||| || ||||| ||||||||||||||||||||| |||||| ||| ||| ||||||||    
T  24494908 gtgtaaactggacaatgtttgaacaaactctttaagac-tttaggatttctaaaatacaaaa 24494848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 1e-80; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 387 - 846
Target Start/End: Complemental strand, 22223071 - 22222612
Alignment:
Q  387 tttgaacaaactctttaagacttttagggtttttaagatacaaaaattgaa-cgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgac 485  Q
    |||||||||||||||||| |||| |||| ||| |||||||||||| ||||| ||||||||| |||||||| |||| ||||||||| || |||||||||||    
T  22223071 tttgaacaaactctttaaaacttctaggatttctaagatacaaaagttgaagcgaaaatcctaagtgtttatgcgctatttgatttggtagagtaatgac 22222972  T
Q  486 acagtaaaaatagcagagtattgttgatcttcttta-ggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatatta 584  Q
    ||||| |||||| |||||| |||||||||||||| | ||| ||||| | ||| ||||||  |  |||||||||   || ||||||| ||||||| ||| |    
T  22222971 acagttaaaataacagagtcttgttgatcttcttgatggtattcagatccttgtataggttgagatttgagag---ttggagaagaatgccaacgtataa 22222875  T
Q  585 agagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaag 684  Q
    |||||| ||||||||||||| |||||| |||||| || |||||  |||||||||||||  |||||||||||||| ||||||||||||||||||  |||||    
T  22222874 agagtcattgagaagcttcatatcaagaacgttgagcaattgctggatatggataattccgttggatagtcattcgaaaatcctttgctgaaacaagaag 22222775  T
Q  685 tattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatcc-ttgatagagacaactat 783  Q
    |||  ||||||| |||||   ||||||||||||||| | ||||||||  ||| || | |||||||||||||  || |||||| |||||   ||||||||     
T  22222774 tatctgttcattgttatttctcttgaagttctttgtctatttctacatgtggacataagaagacaaaactgtgctcagatcctttgatgtggacaactac 22222675  T
Q  784 agaagacaataaatctgatgtgcagtttgagtccctcatggtcttccgaagtctgaaggtctt 846  Q
    | ||||||| |||||||| ||| ||| ||||||||||||   |||  ||||||||||||||||    
T  22222674 aaaagacaacaaatctgacgtggagtctgagtccctcatatgcttatgaagtctgaaggtctt 22222612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 368 - 846
Target Start/End: Original strand, 18445656 - 18446132
Alignment:
Q  368 tggtgtaaattgaacaatctttgaacaaactctttaagacttttagggtttttaagatacaaaaattgaa-cgaaaatccaaagtgtttttgcggtattt 466  Q
    |||||| || |||||||| |||||||| |||||  | |||||| ||| ||| ||||||||||||  |||| ||||||||  ||||||||| |||  ||||    
T  18445656 tggtgttaactgaacaatgtttgaacagactcta-atgacttt-aggatttctaagatacaaaagctgaaacgaaaatcttaagtgtttt-gcgcaattt 18445752  T
Q  467 gattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgag 566  Q
    |||| || ||||||||| |||| ||||| ||   |||| ||||||||||| || |||||||||||| |||||||||||||| ||||||||||| || |||    
T  18445753 gatttggaagagtaatggcacaataaaa-taattgagtcttgttgatctttttcaggtcttcagctccttatataggcagggatttgagagacgttggag 18445851  T
Q  567 aagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatc 666  Q
    || ||||  | |  |||||||||||||||||||||| ||| |||||| |||| |||||  |||||||||| |||||||||||||||||||||  ||||||    
T  18445852 aatagtgtaagcgcattaagagtcgttgagaagctttaaaccaaggatgttgagccatatcctgatatggttaattatgttggatagtcattcaaaaatc 18445951  T
Q  667 ctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatcc 766  Q
    ||||| ||||| | ||||||| ||||| |||||||||||||| | |||||||||   ||||||||| |  ||||| ||||||||||||  ||| | ||||    
T  18445952 ctttgttgaaattggaagtatccgttccttcttattgtccttcacgttctttgtccatttctacacgttttcagaagaagacaaaactatactcatatcc 18446051  T
Q  767 -ttgatagagacaactatagaagacaataaatctgatgtgcagtttgagtccctcatggtcttccgaagtctgaaggtctt 846  Q
     ||||| |||||||||||||||||| | |||||||| ||| |   || |||||||| | ||||| |||||||||| |||||    
T  18446052 tttgatggagacaactatagaagacgacaaatctgacgtggatcctgggtccctcaggttcttctgaagtctgaaagtctt 18446132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 423 - 752
Target Start/End: Complemental strand, 19555645 - 19555315
Alignment:
Q  423 gatacaaaaattgaa-cgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttcttta 521  Q
    ||||||||| ||||| |||| |||  |||||||| ||||  |||||||| ||||||||||||||||| |||||| |||||||| |||||||||||| | |    
T  19555645 gatacaaaagttgaaacgaatatctcaagtgtttatgcgcgatttgatttggcagagtaatgacacaataaaaa-agcagagtcttgttgatcttcatca 19555547  T
Q  522 -ggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttggg 620  Q
     ||| ||||| | ||||||||||||   ||||||||||| || |||||||||| || |  || |||| |||||||||||||||||||||||||||||| |    
T  19555546 tggtattcagatccttatataggcattgatttgagagacgttggagaagagtgtcatcgcataaagattcgttgagaagcttcaaatcaaggacgttgag 19555447  T
Q  621 ccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgt 720  Q
    |||||| |  ||||||||||||  ||||||||||||||  ||||||||| |||||||   ||||||| |||||| |||||||| |||||||||| ||| |    
T  19555446 ccattgtcgtatatggataattccgttggatagtcattcaaaaatccttcgctgaaacaggaagtatccgttcaatcttattgcccttgaagttttttat 19555347  T
Q  721 atgtttctacacatggtcagatgaagacaaaa 752  Q
     |||| |||| ||| ||| || ||||||||||    
T  19555346 ctgttgctacgcatagtcggaagaagacaaaa 19555315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 464 - 747
Target Start/End: Original strand, 19053027 - 19053308
Alignment:
Q  464 tttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacattt 563  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||||  | ||||| | ||||||| || |||||||||||| | ||| |||  || ||     
T  19053027 tttgatttgacagagtaatgacacagtaaaaatagcagagtcttgtttttgttcttcaagtcttcaactccttatataggcaaggattagaggaacgttg 19053126  T
Q  564 gagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaa 663  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    |||  |||  ||| ||||    
T  19053127 gagaagagtgccaacacattaagagtcgttaagaagcttcaaatcaagggcgttgggccattgcctgatatggataatgtcattgattag--attcgaaa 19053224  T
Q  664 atcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaaga 747  Q
     ||||||||| ||| |  || ||   |||||||||  | |||||||||||||||||| ||||||| ||| |||||||| |||||    
T  19053225 ttcctttgctaaaattgaaattacatgttcattctcttggtccttgaagttctttgtttgtttctgcacgtggtcagaagaaga 19053308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 564 - 746
Target Start/End: Complemental strand, 11449580 - 11449398
Alignment:
Q  564 gagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaa 663  Q
    |||||||||| || || |||||||||  |||||||||||||||||||||| ||| ||||||||||| |||||||||||    |||  ||| |||||||||    
T  11449580 gagaagagtgtcatcacattaagagtaattgagaagcttcaaatcaaggatgtttggccattgcctaatatggataatgtcattgattagacatttgaaa 11449481  T
Q  664 atcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaag 746  Q
     ||||||| ||||| | ||| ||| |||||||| |  |||||||||||||| ||||| |||||||||||||||||||| ||||    
T  11449480 ttcctttgttgaaactggaattatccgttcattttctttgtccttgaagttttttgtttgtttctacacatggtcagaagaag 11449398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 529 - 751
Target Start/End: Original strand, 11545090 - 11545311
Alignment:
Q  529 agctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcc 628  Q
    |||| |||| ||||||| | |||||  |||| ||||||||||||| || || |||||||||||||||||||||||||||| |||| ||| ||||||| ||    
T  11545090 agctccttagataggcaaggatttgttagacgtttgagaagagtgtcatcacattaagagtcgttgagaagcttcaaatc-aggatgttaggccattacc 11545188  T
Q  629 tgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttct 728  Q
    | |||||||||||    |||  ||   |||||||| ||||||| ||||| | ||| ||| |||| |||||  |||||||||||||| ||||| |||||||    
T  11545189 taatatggataatgtcattgattaaaaatttgaaattcctttgttgaaactggaattatccgtttattctctttgtccttgaagttttttgtttgtttct 11545288  T
Q  729 acacatggtcagatgaagacaaa 751  Q
    ||||||||||||| |||||||||    
T  11545289 acacatggtcagaagaagacaaa 11545311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 485 - 641
Target Start/End: Original strand, 14475133 - 14475289
Alignment:
Q  485 cacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatatta 584  Q
    |||||| ||||||||||||| |||||  | ||||||| |||| ||||| |||||||||||| | ||||||||||| || || ||||||||||||| ||||    
T  14475133 cacagttaaaatagcagagttttgtttttattctttaagtctccagctccttatataggcaaggatttgagagacgttagataagagtgccaacacatta 14475232  T
Q  585 agagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataat 641  Q
    ||||||||||| |||||| |||||||  || ||||  | ||||||||||||||||||    
T  14475233 agagtcgttgaaaagctttaaatcaaaaacattggatctttgcctgatatggataat 14475289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 304 - 510
Target Start/End: Complemental strand, 21588731 - 21588524
Alignment:
Q  304 agagacttctatttgttaatagcaaatataaacaaacttattcttacatcatatata-caaaagttggtgtaaattgaacaatctttgaacaaactcttt 402  Q
    |||||||| | |||||| | | |||||| |||||||||| ||||||||||  || || |||||| |||||||||||||||||  |   |||| ||||| |    
T  21588731 agagacttatgtttgtttacaacaaataaaaacaaacttgttcttacatcggatttaacaaaagatggtgtaaattgaacaaagta--aacagactctat 21588634  T
Q  403 aagacttttagggtttttaagat-acaaaaattgaa-cgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagca 500  Q
    |  ||||||||| ||| |||||| |||||  ||||| |||||||||||||||| | |||| ||||||||| ||||||||||||||||||| |||||||||    
T  21588633 acaacttttaggatttctaagattacaaatgttgaaacgaaaatccaaagtgtatatgcgctatttgatttggcagagtaatgacacagtcaaaatagca 21588534  T
Q  501 gagtattgtt 510  Q
    |||| |||||    
T  21588533 gagtcttgtt 21588524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 492 - 670
Target Start/End: Original strand, 47575539 - 47575717
Alignment:
Q  492 aaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcg 591  Q
    ||||||| ||||| ||||||   ||||| | || |||||||  ||||||||| | | ||||||||||  || |||||||||||||||| ||||||| |||    
T  47575539 aaaatagtagagtcttgttgtcgttcttcaagttttcagctttttatatagggaaggatttgagagaagttggagaagagtgccaacacattaagattcg 47575638  T
Q  592 ttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatccttt 670  Q
    ||||||   ||||||||||||||||||||||||| ||| |||||||||||  |||||  ||| ||||||||| ||||||    
T  47575639 ttgagataattcaaatcaaggacgttgggccattccctaatatggataatgttgttgattagacatttgaaattccttt 47575717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 474 - 641
Target Start/End: Complemental strand, 17474382 - 17474216
Alignment:
Q  474 cagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtg 573  Q
    |||||||| | |||||| ||||||||||||| |||||  | ||||| | ||||| |||| |||||||||||| | ||||||||||| ||  |||||||||    
T  17474382 cagagtaagggcacagttaaaatagcagagtcttgttt-tattcttcaagtctttagcttcttatataggcaaggatttgagagacgttgaagaagagtg 17474284  T
Q  574 ccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataat 641  Q
     || |  ||||||| | ||||| ||||||||||||| |||||||||  | ||||| |||| |||||||    
T  17474283 tcagcgcattaagatttgttgaaaagcttcaaatcagggacgttggatctttgccggatagggataat 17474216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 581 - 747
Target Start/End: Original strand, 11419642 - 11419808
Alignment:
Q  581 attaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaata 680  Q
    |||| ||||||||| |||||||||||||||| | |||||| | ||| || || |||||||||   |||  ||| ||||||||| |||| |  ||||| |     
T  11419642 attatgagtcgttgtgaagcttcaaatcaagaatgttgggtctttgtctaatttggataattccattgattagacatttgaaattcctctattgaaattg 11419741  T
Q  681 gaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaaga 747  Q
     || |||  |||||||||  |||||||||||||||||||| ||||||||||| |||||||| |||||    
T  11419742 taattatatgttcattctctttgtccttgaagttctttgtttgtttctacacgtggtcagaagaaga 11419808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 595 - 752
Target Start/End: Complemental strand, 21588466 - 21588309
Alignment:
Q  595 agaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttca 694  Q
    ||||||||||||||||||| ||||  ||||||   |||||| ||||||  |||| ||||| ||| ||||||  ||||||||||  | ||||||    |||    
T  21588466 agaagcttcaaatcaaggatgttgaaccattgttggatatgaataatttcgttgaatagttattcgaaaatattttgctgaaacaaaaagtatcttatca 21588367  T
Q  695 ttcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaa 752  Q
    ||||||||| |||| ||||||||||| ||||||||||  |||| ||| ||||||||||    
T  21588366 ttcttattgcccttaaagttctttgtctgtttctacatgtggttagaagaagacaaaa 21588309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 496 - 545
Target Start/End: Original strand, 8911496 - 8911545
Alignment:
Q  496 tagcagagtattgttgatcttctttaggtcttcagctacttatataggca 545  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||||||||    
T  8911496 tagcagagtcttgttgatcttctttaggtcttcagatccttatataggca 8911545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 21589017 - 21588927
Alignment:
Q  166 atcaatgactcttccaaaagacttct-aacgctcaaacacacttgtaaaagacttctaatgctcaagatcactaccaagagacttcctttac 256  Q
    ||||||||||||| ||| |||||||| || |||||| |||||||| || ||||||||  |||||||| ||||| ||||||||||||| ||||    
T  21589017 atcaatgactctttcaagagacttctcaatgctcaagcacacttgcaagagacttctt-tgctcaaggtcactcccaagagacttccattac 21588927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 751
Target Start/End: Original strand, 12236272 - 12236323
Alignment:
Q  700 attgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    |||||||||||||||||| |||||||||| |||||| ||||| || ||||||    
T  12236272 attgtccttgaagttcttcgtatgtttcttcacatgatcagaagaggacaaa 12236323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 751
Target Start/End: Complemental strand, 13977406 - 13977307
Alignment:
Q  653 gtcatttgaaaatcctttgctgaaaatagaagtattcgttca-ttcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    ||||||||||| |||||||||  ||| |||| |||| ||| | |||| |||||| |||||||||||||| ||||||| ||| | |||||| |||| ||||    
T  13977406 gtcatttgaaattcctttgcttcaaaaagaattatttgtttaattctaattgtctttgaagttctttgtttgtttctgcacgtagtcagaagaaggcaaa 13977307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 751
Target Start/End: Original strand, 23866013 - 23866112
Alignment:
Q  653 gtcatttgaaaatcctttgctgaaaatagaagtattcgtt-cattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    ||||||| ||| |||||||||  |||  ||| |||||||| |||||  ||||||||||||||||||||| ||||| | |||||| ||||| || ||||||    
T  23866013 gtcatttaaaattcctttgcttcaaaaggaattattcgtttcattccaattgtccttgaagttctttgtttgtttatgcacatgatcagaagaggacaaa 23866112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 574
Target Start/End: Complemental strand, 22316989 - 22316878
Alignment:
Q  462 tatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgat-cttctttaggtcttcagctacttatataggcaggaatttgagagaca 560  Q
    ||||||||| | ||||||| |||||||| |||||||||||||| || ||  | |||||| | |||||||||| ||| |||||||||  |||||||||||     
T  22316989 tatttgatttgacagagtattgacacag-aaaaatagcagagtctttttacttcttcttcatgtcttcagctcctt-tataggcagtgatttgagagacg 22316892  T
Q  561 tttgagaagagtgc 574  Q
    || ||||| |||||    
T  22316891 ttagagaaaagtgc 22316878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 7e-76; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 409 - 799
Target Start/End: Complemental strand, 27486298 - 27485911
Alignment:
Q  409 tttagggtttttaagatacaaaaattgaacgaaaa-tccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtatt 507  Q
    |||||| ||| |||||||||||| |||||  |||| ||| | ||||||| ||| ||||||||| || |||||||||||| ||||||||||||||  | ||    
T  27486298 tttaggatttctaagatacaaaagttgaaataaaaatcctatgtgtttt-gcgctatttgatttggtagagtaatgacatagtaaaaatagcag--tctt 27486202  T
Q  508 gttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaat 607  Q
    ||| ||||| || ||||||| ||||  ||||||| | ||||||||||||||| ||  ||||||||||||   |||||||| || ||||||||||||||||    
T  27486201 gttaatctttttaaggtctttagctctttatatatgaaggaatttgagagacgttgaagaagagtgccagtgtattaagaatcattgagaagcttcaaat 27486102  T
Q  608 caaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtcct 707  Q
    |||||| |||| ||||||| |||||||| ||||||  ||| ||||||||||  ||||||||||||||||| | ||||||  | |||||||||||||||||    
T  27486101 caaggaagttgagccattgtctgatatgtataattcagttagatagtcattaaaaaatcctttgctgaaactggaagtaaccattcattcttattgtcct 27486002  T
Q  708 tgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatccttgatagagacaactatagaagacaataaatct 799  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||| || ||| | |||||| || |||||||||||| ||||| | ||||||    
T  27486001 tgaagttctttgtctgtttctacacgtggtcagaagaagacaaaattgtactcaaatcctt-atggagacaactatacaagacgacaaatct 27485911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 435 - 789
Target Start/End: Original strand, 46348760 - 46349112
Alignment:
Q  435 gaacgaaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctac 534  Q
    |||| ||||||| ||||||||| ||| ||||||||| |||| ||||| |||||||||||||||||||     |||| ||||| || || |||||||||      
T  46348760 gaacaaaaatcctaagtgtttt-gcgctatttgatttggcatagtaacgacacagtaaaaatagcagcca--tgttaatctttttcagatcttcagctct 46348856  T
Q  535 ttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatat 634  Q
    ||||||||| ||||||||||||||| || || ||||||||||||  | ||| ||||||||| ||||||||||| ||||||| || | ||||| |  ||||    
T  46348857 ttatataggtaggaatttgagagacgttggataagagtgccaacgcactaaaagtcgttgaaaagcttcaaattaaggacgctgagtcattgtcatatat 46348956  T
Q  635 ggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacat 734  Q
    | |||||| | |   |  ||||||||||||||||||| ||||| | ||||||| |||||||||||||||  ||||||||||||||| |||||  |||| |    
T  46348957 gaataattttctctcaaggtcatttgaaaatcctttgttgaaactggaagtatacgttcattcttattgctcttgaagttctttgtctgttttaacacgt 46349056  T
Q  735 ggtcagatgaagacaaaactgaactaagatcc-ttgatagagacaactatagaaga 789  Q
    | | | | |||||||||| || ||| || ||| ||||| |||||||||||||||||    
T  46349057 gtttataggaagacaaaattgtactcaggtcctttgatggagacaactatagaaga 46349112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 523 - 751
Target Start/End: Complemental strand, 13291919 - 13291691
Alignment:
Q  523 gtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggcc 622  Q
    |||||||||| |||| | | ||| | ||||||||||| || |||||||||| ||||  ||||||| ||||||||||| |||||||||||||| |||||||    
T  13291919 gtcttcagctccttacacatgcaaggatttgagagacgttggagaagagtgtcaacgcattaagaatcgttgagaagtttcaaatcaaggacattgggcc 13291820  T
Q  623 attgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtat 722  Q
    ||| |||||||||||||||    |||  ||| ||||||||| | ||||| ||||| |  || ||| ||||||||||| ||||||||| |||||||||| |    
T  13291819 atttcctgatatggataatgcaattgattagacatttgaaatttctttgttgaaactgaaattatccgttcattctttttgtccttggagttctttgttt 13291720  T
Q  723 gtttctacacatggtcagatgaagacaaa 751  Q
    |||||||||| |||||||| |||||||||    
T  13291719 gtttctacacgtggtcagaagaagacaaa 13291691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 518 - 751
Target Start/End: Original strand, 10928826 - 10929059
Alignment:
Q  518 tttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgtt 617  Q
    |||| ||||||| |||||||  |||||| | || ||| |||| || |||||||||||||||| |||||||||||||||||||||| |||||||||| | |    
T  10928826 tttaagtcttcatctacttaattaggcaaggatatgaaagacgttggagaagagtgccaacacattaagagtcgttgagaagcttgaaatcaaggatgat 10928925  T
Q  618 gggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctt 717  Q
     || | ||||||||||||||||||    |||  ||| ||||  ||| ||| ||||||||| | ||| ||| | ||||||||  || |||||||||||| |    
T  10928926 aggtctttgcctgatatggataatgccattgattagacattcaaaattccattgctgaaactggaattatccattcattctctttatccttgaagttcct 10929025  T
Q  718 tgtatgtttctacacatggtcagatgaagacaaa 751  Q
    ||| |||||||||||||||||||| || ||||||    
T  10929026 tgtttgtttctacacatggtcagaagaggacaaa 10929059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 441 - 751
Target Start/End: Complemental strand, 16199344 - 16199035
Alignment:
Q  441 aaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttcttta-ggtcttcagctacttata 539  Q
    |||||| |||||||| | || ||||||||| | ||||||||||| ||| | ||||||||||| |||||||||||||||| | ||||||||||| ||||||    
T  16199344 aaatcctaagtgtttatacgctatttgatttgacagagtaatgaaacaattaaaatagcagattattgttgatcttcttcatggtcttcagcttcttata 16199245  T
Q  540 taggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggata 639  Q
    |||||||| |||| |||||| || ||||||| || ||    ||  ||| || | |||||||| ||  | ||||| ||||  ||||| |  ||||||||||    
T  16199244 taggcagggatttaagagacgttggagaagattggcagtgcat--agattcctcgagaagctccagtttaaggatgttgaaccattacgggatatggata 16199147  T
Q  640 attatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtca 739  Q
    |||  |||||||||||||| ||||| ||| ||||||||   ||||| |  |||||||||| |||    |||||| |||||||||||||||||| || |||    
T  16199146 atttcgttggatagtcattcgaaaaccctatgctgaaacaggaagtttctgttcattcttcttgcttatgaagtcctttgtatgtttctacacgtgatca 16199047  T
Q  740 gatgaagacaaa 751  Q
     | |||||||||    
T  16199046 aaagaagacaaa 16199035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 472 - 751
Target Start/End: Original strand, 17118842 - 17119120
Alignment:
Q  472 ggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagag 571  Q
    |||||| ||||| ||||||||||||| |||||| |||| | | ||||| | ||||||| || |||||||||||| | |||||||||||||| ||||| |     
T  17118842 ggcagaataatggcacagtaaaaataccagagtcttgtcgttattcttcaagtcttcaactccttatataggcaaggatttgagagacattagagaacaa 17118941  T
Q  572 tgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttg 671  Q
       |  | ||||| |||||||||| |||||| |||||||| | ||| | || || ||||||||||||| ||  ||||  |  ||| |||||| |||||||    
T  17118942 atgctgcgtattatgagtcgttgaaaagctttaaatcaagaatgttagcccttttcctgatatggatagtt-cgttgattgatcaattgaaattcctttg 17119040  T
Q  672 ctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    | |||| | ||| |||  |||||||||  |||||||||||||||||||| |||||||| || || ||||| |||||||||    
T  17119041 cggaaactggaattatcagttcattctctttgtccttgaagttctttgtttgtttctatacgtgatcagaagaagacaaa 17119120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 534 - 728
Target Start/End: Complemental strand, 19307153 - 19306959
Alignment:
Q  534 cttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgata 633  Q
    |||||||||||| | |||||||||||  | |||||||||| ||    |||||||||| ||||||||||||||||||| || ||||||||||| |||||||    
T  19307153 cttatataggcaaggatttgagagacgctggagaagagtgtcagtgcattaagagtcattgagaagcttcaaatcaaagatgttgggccatttcctgata 19307054  T
Q  634 tggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttct 728  Q
    ||||||||  |||||  ||  | ||  ||| ||||||||| ||| | ||| |||| ||||||| || |||||||||||||||| ||| |||||||    
T  19307053 tggataatggtgttgattatacgttcaaaattcctttgctcaaattggaattattagttcattttttttgtccttgaagttctatgtttgtttct 19306959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 475 - 677
Target Start/End: Complemental strand, 21528357 - 21528157
Alignment:
Q  475 agagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgc 574  Q
    |||||||||||| ||||||| ||| ||||| ||||| |||||||| |||||| || || ||| |||||||||  |||||| |||  || ||||||||||     
T  21528357 agagtaatgacatagtaaaa-tagtagagtcttgttaatcttcttcaggtctacaactccttgtataggcagtcatttgacagaggttcgagaagagtgt 21528259  T
Q  575 caacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctg 674  Q
    || |  |   |||||||||||||| |||||| ||||| |||| |  || ||||||||||||||||||| ||||| |||||  ||||||  ||||||| ||    
T  21528258 cagcgcaaatagagtcgttgagaatcttcaa-tcaagaacgtcgaccctttgcctgatatggataattctgttgaatagttctttgaatttcctttgttg 21528160  T
Q  675 aaa 677  Q
    |||    
T  21528159 aaa 21528157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 304 - 504
Target Start/End: Original strand, 36863701 - 36863901
Alignment:
Q  304 agagacttctatttgttaatagcaaatataaacaaacttattcttacatcatatatacaaaagttggtgtaaattgaacaatctttgaacaaactcttta 403  Q
    |||||||||||||| |  | | ||||||||||||||||| |||||||| |  ||| |||   ||||||| |||   |||||||||||||||||||||| |    
T  36863701 agagacttctatttatatacaacaaatataaacaaactttttcttacaccggataaacagttgttggtgaaaaca-aacaatctttgaacaaactcttga 36863799  T
Q  404 agactt-ttagggtttttaagatacaaaaattgaacgaaaa-tccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcag 501  Q
     ||||| ||||| ||| |||||||||||| |||||  |||| ||| |||| | |||||  ||||| ||| |||||||||||||||||||| |||||| ||    
T  36863800 -gacttgttaggatttctaagatacaaaagttgaaacaaaagtcctaagtttgtttgcactatttaatttggcagagtaatgacacagtataaatagaag 36863898  T
Q  502 agt 504  Q
    |||    
T  36863899 agt 36863901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 454 - 642
Target Start/End: Original strand, 9323417 - 9323604
Alignment:
Q  454 ttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgat-cttctttaggtcttcagctacttatataggcaggaattt 552  Q
    ||||||| ||||||||| | || ||||||||||||| |||||||| | ||| || ||  | |||||| |||| ||| ||| |||||||||| ||  |  |    
T  9323417 ttttgcgctatttgatttgacaaagtaatgacacag-aaaaatagaaaagtcttattacttcttcttcaggtattcggctccttatataggtagtgaaat 9323515  T
Q  553 gagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataatt 642  Q
    |||||||||| |||||||||||||||  |   ||||||||||||||||||| ||||||| || ||||  | |||||||||||||||||||    
T  9323516 gagagacattggagaagagtgccaacgcaaatagagtcgttgagaagcttc-aatcaagaacattggcgctttgcctgatatggataatt 9323604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 585 - 751
Target Start/End: Original strand, 4514613 - 4514778
Alignment:
Q  585 agagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcc-tttgctgaaaatagaa 683  Q
    ||||||||||||||| ||||||||||||||||| || | |||||||||| |||||||   || |  || |||||||||| ||| ||||||| || |||||    
T  4514613 agagtcgttgagaagtttcaaatcaaggacgttaggtctttgcctgataaggataatgtcgtggattattcatttgaaattccttttgctgcaactagaa 4514712  T
Q  684 gtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
     |||  |||| ||||  |||| ||||||||||||||  | ||| ||||| |||||||| |||||||||    
T  4514713 ttatctgttcgttctctttgtacttgaagttctttg--tttttttacacgtggtcagaggaagacaaa 4514778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 467 - 562
Target Start/End: Complemental strand, 15331593 - 15331499
Alignment:
Q  467 gattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatt 562  Q
    |||| |||||||||||  |||||||||| ||||||||| ||||  |||||||| | || ||||||| |||||||||||||  ||||||||||||||    
T  15331593 gatttggcagagtaattgcacagtaaaa-tagcagagtcttgtcaatcttcttcaagtattcagctccttatataggcagtgatttgagagacatt 15331499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 526 - 821
Target Start/End: Complemental strand, 14427450 - 14427155
Alignment:
Q  526 ttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccatt 625  Q
    |||||||  ||||||||||||  || |||||||| || | ||||||||||| |  ||||||| |||||||||| | |||||||||| | |||||| | ||    
T  14427450 ttcagctcgttatataggcagtgatatgagagacgttagtgaagagtgccagcgcattaagattcgttgagaaacatcaaatcaagaatgttgggtcttt 14427351  T
Q  626 gcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtt 725  Q
     ||| |||||||||||   ||||  ||| ||||  ||  ||||||  ||||  | ||| |||  |||||||||   ||||||||||||||||||| ||||    
T  14427350 tcctaatatggataatgtcgttgagtagacattcaaatttcctttcatgaacttggaattatctgttcattctctatgtccttgaagttctttgtttgtt 14427251  T
Q  726 tctacacatggtcagatgaagacaaaactgaacta--agatccttgatagagacaactatagaagacaataaatctgatgtgcagtttgagtccctca 821  Q
    | ||||| |||| |||  ||||| ||| || ||||  ||| | |||||||||||||||| ||||||  | |||||||| |||  || |||||||||||    
T  14427250 tatacacgtggttagaaaaagac-aaattgtactatcaga-ctttgatagagacaactacagaagaagacaaatctgacgtggtgtatgagtccctca 14427155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 11074204 - 11074287
Alignment:
Q  306 agacttctatttgttaatagcaaatataaacaaacttattcttacatcatatatacaaaagttggtgtaaattgaacaatcttt 389  Q
    |||||||||||| || | | |||||||||||||| || ||||||||||| ||| ||||   |||||||||| ||||||||||||    
T  11074204 agacttctatttatttacaacaaatataaacaaatttgttcttacatcaaataaacaatttttggtgtaaactgaacaatcttt 11074287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 513 - 642
Target Start/End: Complemental strand, 11829752 - 11829626
Alignment:
Q  513 tcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaagg 612  Q
    ||||||| ||||||||| |||||||||||||||   |  |||||||| || ||||||||| ||| || |  || ||||||||||||| ||| |||||||     
T  11829752 tcttcttcaggtcttcaactacttatataggcaatgaaatgagagacgttggagaagagttccagcaca--aatagtcgttgagaagtttc-aatcaaga 11829656  T
Q  613 acgttgggccattgcctgatatggataatt 642  Q
    | ||||| || |||||| ||||||||||||    
T  11829655 atgttggccctttgccttatatggataatt 11829626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 676
Target Start/End: Original strand, 21318400 - 21318488
Alignment:
Q  587 agtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaa 676  Q
    ||||||||||||||||  | ||||| || |||| || |||||||||||| |||||| ||||||| |||| ||||||  ||||||||||||    
T  21318400 agtcgttgagaagctttga-tcaagaacattggccctttgcctgatatgtataattctgttggaaagtcctttgaatttcctttgctgaa 21318488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 27486567 - 27486490
Alignment:
Q  173 actcttccaaaagacttctaac-gctcaaacacacttgtaaaagacttctaatgctcaagatcactaccaagagactt 249  Q
    |||||||||| ||||||| ||  | ||||||||||||| || |||||| ||||||||||| ||||||| |||||||||    
T  27486567 actcttccaagagacttccaattggtcaaacacacttgcaagagacttataatgctcaaggtcactacgaagagactt 27486490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 534 - 641
Target Start/End: Complemental strand, 17034668 - 17034563
Alignment:
Q  534 cttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgata 633  Q
    |||||||||||| | ||||||||||| || |||| |  || ||||  ||||||||||||||||||||||| |||||  ||||||||    ||||||||||    
T  17034668 cttatataggcaaggatttgagagacgttggagagg--tgacaacgcattaagagtcgttgagaagcttcgaatcatagacgttggaatgttgcctgata 17034571  T
Q  634 tggataat 641  Q
    ||| ||||    
T  17034570 tggttaat 17034563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 515 - 614
Target Start/End: Original strand, 19905614 - 19905711
Alignment:
Q  515 ttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggac 614  Q
    ||||| ||||||||| ||  ||||||||||  | ||||||||||| || |||| |  ||||| |  ||||||||||||||||||| ||||||||||||||    
T  19905614 ttcttcaggtcttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggac 19905711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 6e-67; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 474 - 776
Target Start/End: Complemental strand, 17496923 - 17496619
Alignment:
Q  474 cagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtg 573  Q
    |||||||||||||||||||||||| | |||| |||||||||||||| ||||||||| || ||| |||||||||| |||||||||||||| ||||||||||    
T  17496923 cagagtaatgacacagtaaaaataaccgagtcttgttgatcttcttcaggtcttcaactccttttataggcagggatttgagagacattggagaagagtg 17496824  T
Q  574 ccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgct 673  Q
     || |  ||||||||||||||| ||||||||||||||| ||  | || |||||||||||||||||||||  |||| |||||||||||||| ||||||| |    
T  17496823 tcagcgcattaagagtcgttgaaaagcttcaaatcaagaacaatagggcattgcctgatatggataatttcgttgaatagtcatttgaaattcctttgtt 17496724  T
Q  674 gaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaacta--agatccttgat 771  Q
    |||| |  || | |  |||| ||||  ||||||||||| |||||||||||||||||||  |||||||| |||||||||| ||  |||  |||||||||||    
T  17496723 gaaactgaaaatttctgttctttctctttgtccttgaatttctttgtatgtttctacatgtggtcagaagaagacaaaattgtgctattagatccttgat 17496624  T
Q  772 agaga 776  Q
    |||||    
T  17496623 agaga 17496619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 529 - 821
Target Start/End: Complemental strand, 15787994 - 15787701
Alignment:
Q  529 agctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcc 628  Q
    |||| |||||||||||||| |||||| |||||||  | |||||||  | || |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  15787994 agctgcttatataggcagggatttgaaagacattgaataagagtgttagcacattaagagtcattgagaagcttcaaatcaaggatgttgggccattgcc 15787895  T
Q  629 tgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttct 728  Q
    | || || |||||| ||||||||||||||| |||||||||||| ||||| |||||||||   ||||||||  ||||||||||||| |||| | |||||||    
T  15787894 taatttgaataattttgttggatagtcattcgaaaatcctttgttgaaactagaagtatattttcattctctttgtccttgaagtcctttatttgtttct 15787795  T
Q  729 acacatggtcagatgaagacaaaactgaactaagatcc-ttgatagagacaactatagaagacaataaatctgatgtgcagtttgagtccctca 821  Q
    |||| || ||||| |||||||||| |  ||| |||||| ||||| |||| | ||||||||||| | |||||||| ||| ||| || ||||||||    
T  15787794 acacgtgatcagaagaagacaaaattatactcagatcctttgatggagatagctatagaagacgacaaatctgacgtggagtatgggtccctca 15787701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 474 - 821
Target Start/End: Complemental strand, 12669374 - 12669028
Alignment:
Q  474 cagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtg 573  Q
    ||||||||||||||| ||||| ||| ||||| ||||| ||||||||||||| |||  || ||| |||||||| | ||||||||||| || | ||||||||    
T  12669374 cagagtaatgacacattaaaa-tagtagagtcttgttaatcttctttaggtattcgactccttttataggcatggatttgagagacgttggtgaagagtg 12669276  T
Q  574 ccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgct 673  Q
     ||||  ||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  |||| |||||||||  ||| || |||  |    
T  12669275 tcaacgcatttagagtcgttgagaagcttcaaatcaaggacgttgggtaattgcctgatatggataattcggttgaatagtcattcaaaattcttttatt 12669176  T
Q  674 gaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatccttgatag 773  Q
    |||| | ||||||| | ||||||||  |||||||||||||||||||| ||||| | ||  |||||||| |||||||||| |  | | |||||||||| ||    
T  12669175 gaaactggaagtatccattcattctctttgtccttgaagttctttgtctgtttttgcatgtggtcagaagaagacaaaattatattcagatccttgacag 12669076  T
Q  774 agacaactatagaagacaataaatctgatgtgcagtttgagtccctca 821  Q
    ||| | ||||| |||   | |||||||| ||| ||| |||||||||||    
T  12669075 agagagctataaaagttgaaaaatctgacgtggagtctgagtccctca 12669028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 440 - 749
Target Start/End: Complemental strand, 37283639 - 37283329
Alignment:
Q  440 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttcttta-ggtcttcagctacttat 538  Q
    ||||||| |||||||| |||| | ||||||| | || ||||||| |||| | ||||||||| ||| ||||||||| |||| | ||| ||||| | |||||    
T  37283639 aaaatcctaagtgtttatgcgctgtttgatttgtcaaagtaatggcacaattaaaatagcaaagtcttgttgatcatcttcatggtattcaggtccttat 37283540  T
Q  539 ataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggat 638  Q
    |||| |||  ||||||||||| || |||||||||| ||||  || ||||||| ||||||||||||| |||||||||||||  |||||||| |||||| ||    
T  37283539 atagacagtgatttgagagacgttggagaagagtgtcaacgcataaagagtcattgagaagcttcagatcaaggacgttgatccattgccggatatgaat 37283440  T
Q  639 aattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtc 738  Q
    |||| |||||||||| ||||  |||| | |||||||||    ||||||| | ||||||||||||| | |||||||  ||||| ||||||||||| |||||    
T  37283439 aattctgttggatagccattcaaaaaccttttgctgaagcaggaagtatacattcattcttattgcctttgaagtcatttgtctgtttctacacgtggtc 37283340  T
Q  739 agatgaagaca 749  Q
    ||| |||||||    
T  37283339 agaagaagaca 37283329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 474 - 821
Target Start/End: Complemental strand, 19019406 - 19019062
Alignment:
Q  474 cagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtg 573  Q
    ||||||||||||||| ||||| ||||||||| ||||| |||||||| | ||||||| || ||||||||||||   |||| || ||| ||  |||||||||    
T  19019406 cagagtaatgacacaataaaa-tagcagagtcttgtttatcttcttcatgtcttcatctccttatataggcaaagattttagggacgttgaagaagagtg 19019308  T
Q  574 ccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgct 673  Q
    ||| |  ||||||| ||||||||||| ||||||||||||  ||| || ||||||||||||||||||||| ||||| ||||  ||| |||| | |||||||    
T  19019307 ccaccgcattaagaatcgttgagaagattcaaatcaagggtgtttggtcattgcctgatatggataattctgttgaatagctattcgaaatttctttgct 19019208  T
Q  674 gaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaactaagatccttgatag 773  Q
    |||| | ||||||| |||| |||||   ||||||||||||||||| | | |||||| |  |||||||  |||||||||| ||  || | |||||||||||    
T  19019207 gaaattggaagtatccgtttattct--ctgtccttgaagttctttatctatttctatatgtggtcaggagaagacaaaattgtgctcatatccttgatag 19019110  T
Q  774 agacaactatagaagacaataaatctgatgtgcagtttgagtccctca 821  Q
    ||||  ||||| ||||| | |||||||| ||| |||||| ||| ||||    
T  19019109 agactgctataaaagacgacaaatctgacgtggagtttgggtctctca 19019062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 492 - 731
Target Start/End: Original strand, 22638160 - 22638399
Alignment:
Q  492 aaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcg 591  Q
    ||||||||||||| ||||| |||||||| |||| ||||||| |||||||||||| ||||||||||||  || ||||||| || ||  | |  |||| ||     
T  22638160 aaaatagcagagtcttgttaatcttcttcaggttttcagctccttatataggcaagaatttgagagaagttggagaagattgtcagtacaaaaagattca 22638259  T
Q  592 ttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgt 691  Q
    || ||||| || | ||||||||||||| || |||  |||||||| |||||| |||||||||||||||||||||||||||| |||||   ||| ||| |||    
T  22638260 ttaagaagtttgatatcaaggacgttgagcaattttctgatatgcataattttgttggatagtcatttgaaaatcctttgttgaaacaggaaatatccgt 22638359  T
Q  692 tcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||||||||||| |||||||||| ||||| ||||||||||    
T  22638360 tcattcttattgcccttgaagttatttgtctgtttctaca 22638399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 487 - 751
Target Start/End: Original strand, 26897893 - 26898157
Alignment:
Q  487 cagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaag 586  Q
    |||| ||||||||||||| |||||  | ||||| | ||||||| || |||||||||||| | ||||||||||| ||  ||||| ||| ||||  ||||||    
T  26897893 cagttaaaatagcagagtcttgttattattcttcaagtcttcaactccttatataggcaaggatttgagagacgttgaagaagcgtgtcaacgcattaag 26897992  T
Q  587 agtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagta 686  Q
    |||||||||||| ||| ||||||| || ||| | ||||||||| |||||||||||    |||  ||| ||||||||| | |||| |||||| ||||| ||    
T  26897993 agtcgttgagaaactttaaatcaaagatgttagaccattgccttatatggataatctcattgattagacatttgaaatttctttactgaaactagaatta 26898092  T
Q  687 ttcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    || ||| ||| || ||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  26898093 tttgttaattatttttgtccttgcagttctttgtatgtttctacacgtggtcagaagaagacaaa 26898157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 524 - 789
Target Start/End: Complemental strand, 30806070 - 30805804
Alignment:
Q  524 tcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggcca 623  Q
    ||||||| | |||||||  ||| | |||||||| || |||||||| |||| || |  |||||||||||||||||||||||||||||||||| |||| |||    
T  30806070 tcttcagttccttatatttgcatggatttgagatacgtttgagaatagtgtcagcgcattaagagtcgttgagaagcttcaaatcaaggacattggacca 30805971  T
Q  624 ttgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatg 723  Q
    ||||||||||||||||||   ||||  ||| |||| |||| ||||||  ||||| ||||| ||| |||||||| |  || ||||||||||||||||| ||    
T  30805970 ttgcctgatatggataatgtcgttgattagacattcgaaattcctttcatgaaactagaattatccgttcattgtctttctccttgaagttctttgtttg 30805871  T
Q  724 tttctacacatggtcagatgaagacaaaactgaacta--agatccttgatagagacaactatagaaga 789  Q
    ||||||||| ||| |||| |||||| ||| || ||||  |||   |||||||||||||||||||||||    
T  30805870 tttctacacgtggccagaagaagac-aaattgtactatcagagtattgatagagacaactatagaaga 30805804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 474 - 641
Target Start/End: Original strand, 12397638 - 12397805
Alignment:
Q  474 cagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtg 573  Q
    |||||||| | |||| ||||||||| ||||| |||||| | || || | |||||||||| |||||||||||| | ||||||||||| ||  |||||||||    
T  12397638 cagagtaagggcacattaaaaatagtagagtcttgttgttgttgttcaagtcttcagctccttatataggcaaggatttgagagacgttgaagaagagtg 12397737  T
Q  574 ccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataat 641  Q
      ||   ||||||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||    
T  12397738 ttaatgcattaagagtcgttgagaagtttcaaatcaaggatgttggatcattgcctgatatggataat 12397805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 492 - 731
Target Start/End: Complemental strand, 19003390 - 19003152
Alignment:
Q  492 aaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcg 591  Q
    ||||||||||||| |||||| | ||||| |  |||||| || |||||||||||| |  |||||||||||||  ||||||||| |   | |||||||||||    
T  19003390 aaaatagcagagtcttgttgttattcttcaa-tcttcaactccttatataggcaaggttttgagagacattgaagaagagtggcggtacattaagagtcg 19003292  T
Q  592 ttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgt 691  Q
    |||||||||||||||||||||| ||| | ||||| ||| ||||| |||||   ||||  ||| ||||||||| | ||||||| ||| |  || ||| |||    
T  19003291 ttgagaagcttcaaatcaaggatgttagaccattacctaatatgaataatgtcgttgattagacatttgaaatttctttgctaaaactgaaattatccgt 19003192  T
Q  692 tcattcttattgtccttgaagttctttgtatgtttctaca 731  Q
    |||||||  ||||||||||| |||||||| ||||||||||    
T  19003191 tcattctctttgtccttgaaattctttgtttgtttctaca 19003152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 456 - 687
Target Start/End: Complemental strand, 9756834 - 9756603
Alignment:
Q  456 ttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgat-cttctttaggtcttcagctacttatataggcagga-atttg 553  Q
    ||||| ||||||||| | ||||||  || |||| |||||||| |||||| |||||  | |||||| |||||||||||| ||||||||||| |   |||||    
T  9756834 ttgcgctatttgatttgacagagttttggcaca-taaaaataacagagtcttgttacttcttcttcaggtcttcagctccttatataggccgttgatttg 9756736  T
Q  554 agagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatag 653  Q
    |||||| || ||||||||||||| |  |   |||||||||||||| |||  | ||||| ||||||| ||||||||||||||||||| || ||||||| ||    
T  9756735 agagacgttggagaagagtgccagcgcaaatagagtcgttgagaatctttga-tcaagaacgttggcccattgcctgatatggatacttctgttggaaag 9756637  T
Q  654 tcatttgaaaatcctttgctgaaaatagaagtat 687  Q
    || ||||||  ||| ||||||||| |||||||||    
T  9756636 tcctttgaatttccattgctgaaagtagaagtat 9756603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 493 - 782
Target Start/End: Original strand, 22666106 - 22666398
Alignment:
Q  493 aaatagcagagtattgttgatcttctttaggtctt-cagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcg 591  Q
    |||||| ||||| ||||||||||| || |||| || |||||  |||||||||||   ||||||||||  ||  | |||||| | | |  ||||||||||     
T  22666106 aaataggagagtcttgttgatctttttcaggtttttcagctctttatataggcaaagatttgagagatgttgtataagagttctagcgcattaagagtca 22666205  T
Q  592 ttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgt 691  Q
    |||||||||||  ||||||||| ||| | ||||||||||| ||||||||||   | | |||||||||||||| |  || ||| ||| | ||| |||  ||    
T  22666206 ttgagaagctttgaatcaaggatgttagaccattgcctgacatggataatttcatcgaatagtcatttgaaattttttcgcttaaactggaattatctgt 22666305  T
Q  692 tcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaaactgaacta--agatccttgatagagacaacta 782  Q
    |||||||  ||||||||||||||||||||  |||||||||| |||| ||| |||||||||| || ||||  | || ||||||||| |||||||    
T  22666306 tcattctctttgtccttgaagttctttgttcgtttctacacgtggttagaagaagacaaaattgtactatcatatgcttgatagaaacaacta 22666398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 515 - 719
Target Start/End: Complemental strand, 18932931 - 18932728
Alignment:
Q  515 ttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggac 614  Q
    ||||||| ||||||| || |||| ||||||| ||||||||||||| |||||  || ||||||||| |||||||||| | |||||| |||||||||| ||     
T  18932931 ttctttaagtcttcaactccttaaataggcaagaatttgagagacgtttgaagag-gtgccaacacattaagagtcatcgagaagtttcaaatcaatgat 18932833  T
Q  615 gttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagtt 714  Q
     |||| ||||| |||||||||||||||   ||||  ||| ||||||||| |||||| ||| || |  || |||  ||||||||   |||||||| |||||    
T  18932832 attggaccatttcctgatatggataatgtcgttgattaggcatttgaaattcctttactgcaactgtaattatatgttcattcactttgtcctttaagtt 18932733  T
Q  715 ctttg 719  Q
    |||||    
T  18932732 ctttg 18932728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 619
Target Start/End: Complemental strand, 17316612 - 17316516
Alignment:
Q  523 gtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgg 619  Q
    ||||||| || |||||||||||| | ||||||||||| || |||||||||| || |  |||||||||||||||||| ||||||||||||| ||||||    
T  17316612 gtcttcaacttcttatataggcaaggatttgagagacgttggagaagagtgtcagcgcattaagagtcgttgagaatcttcaaatcaagggcgttgg 17316516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 523 - 641
Target Start/End: Original strand, 33438801 - 33438919
Alignment:
Q  523 gtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggcc 622  Q
    |||||||| | |||||||| |||   ||| ||||||| || |||||||||| || |  ||||||| ||||||||||  ||||||||||||| |||||| |    
T  33438801 gtcttcagttccttatataagcaaagattagagagacgttggagaagagtgtcagcgcattaagaatcgttgagaaatttcaaatcaaggaagttgggtc 33438900  T
Q  623 attgcctgatatggataat 641  Q
    |||||||||||||||||||    
T  33438901 attgcctgatatggataat 33438919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 12669795 - 12669681
Alignment:
Q  167 tcaatgactcttccaaaagacttctaac-gctcaaacacacttgtaaaagacttctaatgctcaagatcactaccaagagacttcctttacacaaacaca 265  Q
    |||| ||||||| ||||||||||| ||  |||||| |||||||| || ||||||||||| |||||| |||||||||||||||||||  |||  || ||||    
T  12669795 tcaaggactctttcaaaagacttccaaatgctcaagcacacttgcaagagacttctaatactcaaggtcactaccaagagacttccactactaaagcaca 12669696  T
Q  266 actgcagaagacttc 280  Q
    ||||||  |||||||    
T  12669695 actgcaatagacttc 12669681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 440 - 605
Target Start/End: Complemental strand, 24006555 - 24006390
Alignment:
Q  440 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgtt-gatcttctttaggtcttcagctacttat 538  Q
    ||||||| | ||||||| ||| || |||||| | || | |||||||||||||||| ||||||||  ||||| | ||||||| ||||||||| || | |||    
T  24006555 aaaatcctatgtgttttcgcgctaattgatttgacaaaataatgacacagtaaaa-tagcagagagttgttagttcttcttcaggtcttcaactccgtat 24006457  T
Q  539 ataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaa 605  Q
    ||||| ||| ||||||||||| || |||||||||| ||    | | |||||||||||||||||||||    
T  24006456 ataggtagggatttgagagacgttggagaagagtgtcagtgcaattagagtcgttgagaagcttcaa 24006390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 673 - 751
Target Start/End: Complemental strand, 17316477 - 17316399
Alignment:
Q  673 tgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    ||||| ||||| ||||| |||||| |  |||||||| |||||| |||| |||||||||||||||||||| |||||||||    
T  17316477 tgaaactagaattattctttcattttctttgtccttaaagttccttgtttgtttctacacatggtcagaagaagacaaa 17316399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 655 - 751
Target Start/End: Complemental strand, 19960364 - 19960269
Alignment:
Q  655 catttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    ||||||||| |||||||||  ||| |||| |||| ||||||||  |||||| ||||||||| |||||||||| | ||| |||||||| |||||||||    
T  19960364 catttgaaattcctttgcttcaaaaagaattatttgttcattccaattgtctttgaagttc-ttgtatgtttttgcacgtggtcagaagaagacaaa 19960269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 523 - 635
Target Start/End: Complemental strand, 25791682 - 25791572
Alignment:
Q  523 gtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagct-tcaaatcaaggacgttgggc 621  Q
    ||||||| || |||||||||||| | ||||||||||| ||   ||| |||| ||||  |||||||||| |||||||||| ||||||||| ||||||||      
T  25791682 gtcttcaacttcttatataggcatggatttgagagacgtt--ggaaaagtgtcaactcattaagagtccttgagaagctatcaaatcaa-gacgttggaa 25791586  T
Q  622 cattgcctgatatg 635  Q
     |||||||||||||    
T  25791585 tattgcctgatatg 25791572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 702 - 751
Target Start/End: Complemental strand, 21721188 - 21721139
Alignment:
Q  702 tgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    ||||||||||||||||||| ||| | |||||||| ||||| |||||||||    
T  21721188 tgtccttgaagttctttgtttgtatttacacatgatcagaagaagacaaa 21721139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 440 - 752
Target Start/End: Original strand, 13645065 - 13645376
Alignment:
Q  440 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttata 539  Q
    ||||||| ||||||||| | | ||||||||| | ||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||| ||||||    
T  13645065 aaaatcctaagtgtttt-gtgctatttgatttgacagagtaatgacacagtaaaaatagtagagtcttgttaatcttcttcaggtcttcagctccttata 13645163  T
Q  540 taggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggata 639  Q
    |||||||  ||||||||||   | |||||||||| ||   ||   ||||||||||||||||||| ||||||| | ||||| || ||||||||||||||||    
T  13645164 taggcagtcatttgagagaatctggagaagagtgtcagagtaaatagagtcgttgagaagcttc-aatcaagaatgttggccctttgcctgatatggata 13645262  T
Q  640 attatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgtt-cattcttattgtccttgaagttctttgtatgtttctacacatggtc 738  Q
    |||  |||| ||| || ||||||  ||||||| ||||| ||||| |||  ||| ||||| | |||| ||||| ||||||||| |||||  |||| ||| |    
T  13645263 atttcgttgaataatcgtttgaatttcctttgttgaaagtagaattatctgttgcattccttttgttcttgaggttctttgtctgtttgcacacgtggac 13645362  T
Q  739 agatgaagacaaaa 752  Q
    ||| ||||||||||    
T  13645363 agaagaagacaaaa 13645376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 440 - 752
Target Start/End: Original strand, 13745490 - 13745801
Alignment:
Q  440 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttata 539  Q
    ||||||| ||||||||| | | ||||||||| | ||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||| ||||||    
T  13745490 aaaatcctaagtgtttt-gtgctatttgatttgacagagtaatgacacagtaaaaatagtagagtcttgttaatcttcttcaggtcttcagctccttata 13745588  T
Q  540 taggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggata 639  Q
    |||||||  ||||||||||   | |||||||||| ||   ||   ||||||||||||||||||| ||||||| | ||||| || ||||||||||||||||    
T  13745589 taggcagtcatttgagagaatctggagaagagtgtcagagtaaatagagtcgttgagaagcttc-aatcaagaatgttggccctttgcctgatatggata 13745687  T
Q  640 attatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgtt-cattcttattgtccttgaagttctttgtatgtttctacacatggtc 738  Q
    |||  |||| ||| || ||||||  ||||||| ||||| ||||| |||  ||| ||||| | |||| ||||| ||||||||| |||||  |||| ||| |    
T  13745688 atttcgttgaataatcgtttgaatttcctttgttgaaagtagaattatctgttgcattccttttgttcttgaggttctttgtctgtttgcacacgtggac 13745787  T
Q  739 agatgaagacaaaa 752  Q
    ||| ||||||||||    
T  13745788 agaagaagacaaaa 13745801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 534 - 751
Target Start/End: Complemental strand, 23585133 - 23584916
Alignment:
Q  534 cttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgata 633  Q
    |||||||| ||| | |||||||| |||||  |||||||||| | || ||||||||||||| |||| ||||||| ||| ||||||| | | |||||| ||     
T  23585133 cttatatacgcaaggatttgagaaacattgtagaagagtgctagcacattaagagtcgttaagaatcttcaaaacaacgacgttgagtctttgcctaatt 23585034  T
Q  634 tggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacaca 733  Q
    ||||||||| |||||  | | ||||||||| | ||||| ||||| |||||  || ||||||||||  |||||||||||||||||||| ||||| |||||     
T  23585033 tggataattttgttgattggacatttgaaatttctttgttgaaactagaacaatccgttcattctctttgtccttgaagttctttgtttgtttatacacg 23584934  T
Q  734 tggtcagatgaagacaaa 751  Q
    ||||||||  ||||||||    
T  23584933 tggtcagaataagacaaa 23584916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 477 - 751
Target Start/End: Original strand, 28890120 - 28890393
Alignment:
Q  477 agtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgcca 576  Q
    ||||| |||||||| ||| ||||||||| |||||  | ||||  | ||||| |||| |||||||||||| | |||| | |||| || ||||| ||||||     
T  28890120 agtaaggacacagttaaattagcagagtcttgttattgttctacaagtctttagctccttatataggcaaggatttaa-agacgttggagaaaagtgccg 28890218  T
Q  577 acatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaa 676  Q
    |   ||||||||||||||||||||||||||||||||| |||||    ||||||||||||||||||   ||||  ||| |||| |||| ||||||||| ||    
T  28890219 atgcattaagagtcgttgagaagcttcaaatcaaggatgttggttttttgcctgatatggataatgtcgttgattagacattcgaaattcctttgctaaa 28890318  T
Q  677 aatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    | | ||| | |  |||||||||  |||| ||||||||||  ||| |||||||||||||||||||| || ||||||    
T  28890319 attggaattttctgttcattctctttgttcttgaagttccatgtttgtttctacacatggtcagaagaggacaaa 28890393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 631 - 812
Target Start/End: Complemental strand, 27118774 - 27118593
Alignment:
Q  631 atatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctac 730  Q
    |||||||||||||||||| | ||  ||| |||| |  |||||||||| || ||||||  |||||||||||||||  |||||||||||| | |||||||||    
T  27118774 atatggataattatgttgaacagctattcgaaatttttttgctgaaactaaaagtatatgttcattcttattgttattgaagttctttttctgtttctac 27118675  T
Q  731 acatggtcagatgaagacaaaactgaactaagatccttgatagagacaactatagaagacaataaatctgatgtgcagtttg 812  Q
    ||  ||||| | ||||| ||||||| | | |||| ||||||||||||||||||| ||||||| |||||||| ||| ||||||    
T  27118674 acgcggtcaaaagaagataaaactgcattcagattcttgatagagacaactataaaagacaacaaatctgacgtggagtttg 27118593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 549 - 747
Target Start/End: Complemental strand, 24277390 - 24277194
Alignment:
Q  549 atttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttg 648  Q
    ||||||||||| ||||||||||||||||||| |||||||||| |||| | |||| |||| ||||| |||||| ||||||||||||||||| ||   ||||    
T  24277390 atttgagagacgtttgagaagagtgccaacaaattaagagtcattgaaatgctttaaataaaggatgttggg-cattgcctgatatggat-atgtcgttg 24277293  T
Q  649 gatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaaga 747  Q
      | | ||||||||| ||||||  ||||| |  || ||| ||||||||||  |||||||||||||| ||||| || |||||||| |||| ||| |||||    
T  24277292 atttgacatttgaaattcctttattgaaactgaaattatccgttcattctctttgtccttgaagttatttgtttgcttctacacgtggttagaagaaga 24277194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 454 - 662
Target Start/End: Complemental strand, 24987743 - 24987536
Alignment:
Q  454 ttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgat-cttctttaggtcttcagctacttatataggcaggaattt 552  Q
    ||||||| |||| |||| | |||||||||||||| |||||| ||||||||| |||||| | |||||| |||||||||||  ||| |||||||||  ||||    
T  24987743 ttttgcgctattagatttgacagagtaatgacacggtaaaa-tagcagagtcttgttgcttcttcttcaggtcttcagccccttttataggcagtgattt 24987645  T
Q  553 gagagacatttgagaagagtgccaac-atattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggat 651  Q
    || |||| || |||||||||| ||||  || | ||||||||||||||||||    ||||| ||||||| || |||||||||||||||||||  ||||||     
T  24987644 gaaagacgttggagaagagtgtcaacgctaat-agagtcgttgagaagctt-tggtcaagaacgttggccctttgcctgatatggataattccgttggaa 24987547  T
Q  652 agtcatttgaa 662  Q
    |||| ||||||    
T  24987546 agtcctttgaa 24987536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 581 - 739
Target Start/End: Complemental strand, 23521147 - 23520989
Alignment:
Q  581 attaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaata 680  Q
    |||||||||||||| |||| ||||||||||| | ||||||||||| ||||||||| |||||   ||||  ||| ||||||||| | |||||||| ||       
T  23521147 attaagagtcgttgggaagtttcaaatcaagaatgttgggccattacctgatatgaataatgtcgttgattagacatttgaaattactttgctgcaacat 23521048  T
Q  681 gaagtattcgttcattcttattgtccttgaagttctttgtatgtttctacacatggtca 739  Q
    ||| ||| | ||||||||  |||||||||||||| ||||| ||||| ||||| ||||||    
T  23521047 gaattatccattcattctctttgtccttgaagttttttgtctgtttttacacgtggtca 23520989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 564 - 639
Target Start/End: Complemental strand, 24269477 - 24269403
Alignment:
Q  564 gagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggata 639  Q
    |||||||||||||||| |||||||||| |||| |||||| |||| ||||||||||||  |||||||||||||||||    
T  24269477 gagaagagtgccaacaaattaagagtcattgaaaagctttaaataaaggacgttggg-aattgcctgatatggata 24269403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 581 - 720
Target Start/End: Original strand, 26576542 - 26576682
Alignment:
Q  581 attaagagtcgttgagaagcttcaaatcaaggacgttgggcca-ttgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaat 679  Q
    |||||||||||||||||||||||||||||||||||||||   | |||||||||||  |||||   ||||    |  |||||||| ||||||| || || |    
T  26576542 attaagagtcgttgagaagcttcaaatcaaggacgttggtatatttgcctgatataaataatgtcgttgatgggatatttgaaattcctttgttgcaact 26576641  T
Q  680 agaagtattcgttcattcttattgtccttgaagttctttgt 720  Q
     ||| |||| |||||||||| ||||| ||||||||||||||    
T  26576642 ggaattatttgttcattctttttgtctttgaagttctttgt 26576682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 677
Target Start/End: Original strand, 5826152 - 5826338
Alignment:
Q  491 aaaaatagcagagtattgttgat-cttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagt 589  Q
    |||| ||||||||| |||||| | |||||| |||||||||||| ||| |||||||||  ||||||||||| |  ||||| |||| || |  |   | |||    
T  5826152 aaaagtagcagagtcttgttgcttcttcttcaggtcttcagctccttttataggcagtgatttgagagacgtgggagaaaagtgtcagcgcaaataaagt 5826251  T
Q  590 cgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaa 677  Q
    |||||||||||||  | ||||| | ||||| || ||||||||||||||||||  ||||||| |||| ||||||  | |||||||||||    
T  5826252 cgttgagaagctttga-tcaagaaagttggccctttgcctgatatggataatcgtgttggaaagtcctttgaattttctttgctgaaa 5826338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 677
Target Start/End: Original strand, 5828751 - 5828937
Alignment:
Q  491 aaaaatagcagagtattgttgat-cttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtgccaacatattaagagt 589  Q
    |||| ||||||||| |||||| | |||||| |||||||||||| ||| |||||||||  ||||||||||| |  ||||| |||| || |  |   | |||    
T  5828751 aaaagtagcagagtcttgttgcttcttcttcaggtcttcagctccttttataggcagtgatttgagagacgtgggagaaaagtgtcagcgcaaataaagt 5828850  T
Q  590 cgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaa 677  Q
    |||||||||||||  | ||||| | ||||| || ||||||||||||||||||  ||||||| |||| ||||||  | |||||||||||    
T  5828851 cgttgagaagctttga-tcaagaaagttggccctttgcctgatatggataatcgtgttggaaagtcctttgaattttctttgctgaaa 5828937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 568 - 619
Target Start/End: Complemental strand, 18528270 - 18528219
Alignment:
Q  568 agagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgg 619  Q
    |||||||||||| |||||||||| ||||||||| ||||||||| ||||||||    
T  18528270 agagtgccaacacattaagagtctttgagaagcatcaaatcaaagacgttgg 18528219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 585 - 642
Target Start/End: Complemental strand, 23433096 - 23433040
Alignment:
Q  585 agagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataatt 642  Q
    ||||||||| ||||||||||| ||||| ||||||  || |||||||||||||||||||    
T  23433096 agagtcgttaagaagcttcaa-tcaagaacgttgtccctttgcctgatatggataatt 23433040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 440 - 676
Target Start/End: Original strand, 26258 - 26491
Alignment:
Q  440 aaaatccaaagtgtttttgcggtatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgatcttctttaggtcttcagctacttata 539  Q
    ||||||| ||||||||| | | ||||||||| | || |||||||||||||||||| | ||||||| |||||  ||||||| |||||||||||| ||||||    
T  26258 aaaatcctaagtgttttgg-gctatttgatttgacatagtaatgacacagtaaaatt-gcagagtcttgttattcttcttcaggtcttcagctccttata 26355  T
Q  540 taggcaggaatttgagagacatttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggata 639  Q
    || ||||  ||||||||| | || ||||||||||| |   ||   ||||||||| ||||||||| ||||||| ||||||| || ||||||||||||||||    
T  26356 tatgcagtcatttgagaggcgttggagaagagtgctagtgtaaatagagtcgttcagaagcttc-aatcaagaacgttggccctttgcctgatatggata 26454  T
Q  640 attatgttggatagtcatttgaaaatcctttgctgaa 676  Q
    ||| | ||| |||||| ||||||  ||||||| ||||    
T  26455 attctattgaatagtcctttgaatttcctttgttgaa 26491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 462 - 677
Target Start/End: Original strand, 2418 - 2632
Alignment:
Q  462 tatttgattcggcagagtaatgacacagtaaaaatagcagagtattgttgat-cttctttaggtcttcagctacttatataggcaggaatttgagagaca 560  Q
    ||||||||| | ||||||||||||||||||||| ||||| ||| |||||  | |||||||||||||||| || |||||||| ||||  |||||||||||     
T  2418 tatttgatttgacagagtaatgacacagtaaaa-tagcaaagtcttgttatttcttctttaggtcttcaactccttatataagcagtgatttgagagacg 2516  T
Q  561 tttgagaagagtgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccattgcctgatatggataattatgttggatagtcatttg 660  Q
    || ||||||||||||| || |   ||||||||| ||||| ||   || ||  ||| ||| ||||||||| |||||  ||||||||||||| |||| ||||    
T  2517 ttggagaagagtgccagcacaaatagagtcgttaagaagatt-tgataaaaaacgatggcccattgcctaatatgattaattatgttggaaagtcctttg 2615  T
Q  661 aaaatcctttgctgaaa 677  Q
    ||  |||||||||||||    
T  2616 aatttcctttgctgaaa 2632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 526 - 751
Target Start/End: Original strand, 5766 - 5992
Alignment:
Q  526 ttcagctacttatataggcaggaatttgagagacatttgagaagag-tgccaacatattaagagtcgttgagaagcttcaaatcaaggacgttgggccat 624  Q
    ||||||| | ||||||| || | ||||||||||| || ||||| |  |||||||  |||||||||| || ||||||||||||||||| |||||   || |    
T  5766 ttcagctccgtatatagacaaggatttgagagacgttggagaacaaatgccaacgcattaagagtcatttagaagcttcaaatcaagaacgttatccctt 5865  T
Q  625 tgcctgatatggataattatgttggatagtcatttgaaaatcctttgctgaaaatagaagtattcgttcattcttattgtccttgaagttctttgtatgt 724  Q
    ||||| ||||| ||| || |||||  ||| ||||||||| ||||||||||||| | ||| |||   ||||||||  |||||| ||||||||||| | |||    
T  5866 tgcctaatatgaatagttctgttgattagacatttgaaattcctttgctgaaacttgaattatctattcattctctttgtccctgaagttctttctttgt 5965  T
Q  725 ttctacacatggtcagatgaagacaaa 751  Q
    || ||||| | |||||| |||||||||    
T  5966 ttttacacgttgtcagaagaagacaaa 5992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 691 - 751
Target Start/End: Original strand, 1298 - 1358
Alignment:
Q  691 ttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    |||||||  ||||||||||||||||||||| ||||||| ||| |||||||| || ||||||    
T  1298 ttcattccaattgtccttgaagttctttgtttgtttctgcacgtggtcagaagaggacaaa 1358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 691 - 751
Target Start/End: Original strand, 7272 - 7332
Alignment:
Q  691 ttcattcttattgtccttgaagttctttgtatgtttctacacatggtcagatgaagacaaa 751  Q
    |||||||  ||||||||||||||||||||| ||||||| ||| |||||||| || ||||||    
T  7272 ttcattccaattgtccttgaagttctttgtttgtttctgcacgtggtcagaagaggacaaa 7332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 513 - 573
Target Start/End: Complemental strand, 57165 - 57105
Alignment:
Q  513 tcttctttaggtcttcagctacttatataggcaggaatttgagagacatttgagaagagtg 573  Q
    ||||||| |||||||||||| ||| |||||||||   ||||||||||||| ||||||||||    
T  57165 tcttcttcaggtcttcagctccttttataggcagtgctttgagagacattggagaagagtg 57105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 732
Target Start/End: Complemental strand, 42227 - 42184
Alignment:
Q  689 cgttcattcttattgtccttgaagttctttgtatgtttctacac 732  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||    
T  42227 cgttctttctttttgtccttgaagttctttgtttgtttctacac 42184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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