View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760-Insertion-4 (Length: 445)
Name: NF5760-Insertion-4
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 40 - 411
Target Start/End: Complemental strand, 18389709 - 18389341
Alignment:
| Q |
40 |
ttcgcctacaccagcgcctgttccatttcctaattcgcctccaccagcgcctgttccgagtcctatttcttctccacctccccctaatccaaatgcacca |
139 |
Q |
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| T |
18389709 |
ttcgcctacaccagctcctgttccgcctcctaattcgcctccaccagcgcctgttccgagtcctatttcttc---acctccccctaatccaaatgcacca |
18389613 |
T |
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| Q |
140 |
gaaccggaacctactgtggctggtcaaggaggctcatcgggtctaagtggcggtcaaaaggcggggatagtaataggtacacttatggcagctgccatat |
239 |
Q |
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| T |
18389612 |
gaaccggaacctactgcggctggtcaaggaggctcatcgggtctaagtggcggtcaaaaggcggggatagtaataggtacacttctgggagctgccatat |
18389513 |
T |
|
| Q |
240 |
taggtttcattggaatggtttactggaagcgccgagttaacactagaagaaaccattatagtgatgctgccagaaacattgaactttgatcttacaaatt |
339 |
Q |
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| T |
18389512 |
taggtttcattggaatggtttgctggaagcgccgagttaacattagaagaaaccgttatagtgatgctgccagaaacattgaactttgatcttacaaatt |
18389413 |
T |
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| Q |
340 |
aaggatttgttttgtcctgaaacattttaattttactttcaaaatgcaaggaaacttcggaaaatggtcggg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18389412 |
aaggatttgttttgtcctgaaacattttaattttactttcaaaatgcaaggaaacttcggaaaatggtcggg |
18389341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 18389708 - 18389653
Alignment:
| Q |
8 |
tcgcctacaccagcgcctgttccgtctcctaattcgcctacaccagcgcctgttcc |
63 |
Q |
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| T |
18389708 |
tcgcctacaccagctcctgttccgcctcctaattcgcctccaccagcgcctgttcc |
18389653 |
T |
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