View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760-Insertion-5 (Length: 417)
Name: NF5760-Insertion-5
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760-Insertion-5 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 7 - 417
Target Start/End: Complemental strand, 30835492 - 30835082
Alignment:
| Q |
7 |
actattaccctccttgtcctcaaccagaaaaggttattggcctcacaaatcattcggatcctcaaggtgttactctcctcctacaactcaatgaagtaga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30835492 |
actattaccctccttgtcctcaaccagaaaaggttattggcctcacaaatcattcggatcctcaaggtgttactctcctcctacaactcaatgaagtaga |
30835393 |
T |
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| Q |
107 |
aggtctccaaataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattggggacgtcctagaggtnnnnnnnttc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
30835392 |
aggtctccaaataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattggggacgtgctagaggtaaaaaaattc |
30835293 |
T |
|
| Q |
207 |
attcatatatcaaacaatttatagtactcaatgatttaaatagagcttgttgaataaataaataaatagcattaattcaacgctgactaaagataaggtg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30835292 |
attcatatatcaaacaatttatagtactcaatgatttaaatagagcttgttgaataaataaataaatagcattaattcaacgttgactaaagataaggtg |
30835193 |
T |
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| Q |
307 |
atgatagagatagtgtctgtttgaattgacagtaagtttgacaaaattacggtgattttgatgaaaatctaaagtataattttagtttaaatggtcatag |
406 |
Q |
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| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30835192 |
aggatagagatagtgtctgtttgaattgacggtaagattgacaaaattacggtgattttgatgaaaatctaaagtataattctagtttaaatggtcatag |
30835093 |
T |
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| Q |
407 |
cccatcgtgat |
417 |
Q |
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| T |
30835092 |
cccatcgtgat |
30835082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 30840105 - 30839916
Alignment:
| Q |
7 |
actattaccctccttgtcctcaaccagaaaaggttattggcctcacaaatcattcggatcctcaaggtgttactctcctcctacaactcaatgaagtaga |
106 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| || ||| |||| | ||| ||||| ||||||||||||||||||| |
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| T |
30840105 |
actattacccaccttgtcctcaaccagagaaggttattggtctcacaaatcattcagaccctgtaggtctcactatcctcttacaactcaatgaagtaga |
30840006 |
T |
|
| Q |
107 |
aggtctccaaataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattggggacgtcctagaggt |
196 |
Q |
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||| | || ||||||||| || | ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| | |||||||| |
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| T |
30840005 |
agggttacagataaggaaaaattgcatgtgggttcctgttaaaccccttcccaatgccttcattgtcaacattggtgacatgctagaggt |
30839916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 30828129 - 30827951
Alignment:
| Q |
7 |
actattaccctccttgtcctcaaccagaaaaggttattggcctcacaaatcattcggatcctcaaggtgttactctcctcctacaactcaatgaagtaga |
106 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||| ||| | | ||| |||| |||||||||||||| ||||| |
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| T |
30828129 |
actattaccctccatgtccacaaccagaaaaggttattggcctaacaccccattcagatggatctgcactcactatccttctacaactcaatgatgtaga |
30828030 |
T |
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| Q |
107 |
aggtctccaaataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattggggac |
185 |
Q |
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| T |
30828029 |
agggctccaagtgaggaaagatggtatgtgggttcctgttaaacccctgcctaatgccttcattgttaacattggggac |
30827951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 30853022 - 30852844
Alignment:
| Q |
7 |
actattaccctccttgtcctcaaccagaaaaggttattggcctcacaaatcattcggatcctcaaggtgttactctcctcctacaactcaatgaagtaga |
106 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||| ||| | | ||| |||| |||||||||||||| ||||| |
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| T |
30853022 |
actattaccctccatgtccacaaccagaaaaggttattggcctaacaccccattcagatggatctgcactcactatccttctacaactcaatgatgtaga |
30852923 |
T |
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| Q |
107 |
aggtctccaaataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattggggac |
185 |
Q |
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||| |||||| | ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |
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| T |
30852922 |
agggctccaagtgaggaaagatggtatgtgggttcctgttaaacccctgcctaatgccttcattgttaacattggggac |
30852844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 26914306 - 26914200
Alignment:
| Q |
90 |
caactcaatgaagtagaaggtctccaaataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattggggacgtcc |
189 |
Q |
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|||||||||||| ||||||| || ||||||| |||||||| |||||| ||||| ||||||| || | ||||| || || |||||||||| ||| | | |
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| T |
26914306 |
caactcaatgaaatagaaggccttcaaataaaaaaagatggaatgtggattcctattaagcctctcacaaatgcttttgttatcaacattggagacatgc |
26914207 |
T |
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| Q |
190 |
tagaggt |
196 |
Q |
| |
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||||||| |
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| T |
26914206 |
tagaggt |
26914200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 21211924 - 21212030
Alignment:
| Q |
90 |
caactcaatgaagtagaaggtctccaaataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattggggacgtcc |
189 |
Q |
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|||||||||||| ||||||| || ||||||| |||||||| |||||| ||||| ||||||| || | ||||| || || |||||||||| ||| | | |
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| T |
21211924 |
caactcaatgaaatagaaggccttcaaataaaaaaagatggaatgtggattcctattaagcctctcacaaatgcttttgttatcaacattggagacatgc |
21212023 |
T |
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| Q |
190 |
tagaggt |
196 |
Q |
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||||||| |
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| T |
21212024 |
tagaggt |
21212030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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