View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760-Insertion-6 (Length: 313)
Name: NF5760-Insertion-6
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 33717558 - 33717253
Alignment:
| Q |
8 |
ctatgcgaggggatccccttctggctgacgctgatcgtaataagaagtttttggattatcatgcatttgttcaattnnnnnnnnngtgttaggtatgact |
107 |
Q |
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| T |
33717558 |
ctatgtgaggggatccccttctggccgacgctgatcctaataagaagtttttggattatcatgcatttgttcaattaaaaaaaaagtgttaggtatgact |
33717459 |
T |
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| Q |
108 |
tctagtttattgataagtgaacaagtgacgctcaattatcccatggtacggttcgtgtgtaattttgtaatctacactgcagtatttgaacataagtttt |
207 |
Q |
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| T |
33717458 |
tatagtttactgataagtgaacaagtgacgctcaattatcccatggtacggttcgtgtgtaattttgtaatctacactgcagtatttgaacataagtttt |
33717359 |
T |
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| Q |
208 |
aatctgtaaaccttaagctcgattatcaataaaaaagtactgcagccactctgcaatcttagacttagccacaattggtcgagctccttgatcaaatctt |
307 |
Q |
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||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33717358 |
aatctgtaaaccttaagctttattattaatagaaaagtactgcagccactctgcaatcttagacttagccacaattggtcgagctccttgatcaaatctt |
33717259 |
T |
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| Q |
308 |
gtgtgt |
313 |
Q |
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|||||| |
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| T |
33717258 |
gtgtgt |
33717253 |
T |
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