View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760_high_4 (Length: 459)
Name: NF5760_high_4
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760_high_4 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 39636951 - 39637378
Alignment:
| Q |
18 |
atagtgagtgaattatgaaattatgaaatgaagtgtttgcttcaagcaacaatgtatatacatgttctcacccagtataaataaaatgaaaagtcaaata |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39636951 |
atagtgagtgaattaggaaattatgaaatgaagtgtttgcttcaagcaacaatgtatatacatgttctcccccagtataaataaaatgaaaagtcaaata |
39637050 |
T |
|
| Q |
118 |
aacttagaaaggagaaaccacattgtattgagcacattttgagtaatgaaatgcaataagtttattcctctnnnnnnntataaacttagaaagcaaaagg |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39637051 |
aacttagaaaggagaaaccacattgtattgaacacattttgagtaatgaaatgcaataagtttattcctctcaaaaaatataaacttagaaagcaaaagg |
39637150 |
T |
|
| Q |
218 |
aaggtttgattgttgattaaaatagaaaagatcatagagactttataatcagtaagttgtagaaaactatgtgaatcatacaaaaaaccactgctgccta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39637151 |
aaggtttgattgttgattaaaatagaaaagatcatagagactttataatcggtaagttgtagaaaactatgtgaatcatacaaaaaaccactgctgccta |
39637250 |
T |
|
| Q |
318 |
tcttctacaggttaaaaagattttagtggatggcaaattacattttattcttgtttttggccatttaatttgtgtttgtgatcgtggtggcattcactta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39637251 |
tcttctacaggttaaaaagattttagtggatggcaaattacattttattcttgtttttggccatttaa-ttgtgtttgtgatcgtggtggcattcactta |
39637349 |
T |
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| Q |
418 |
agttaaaatgttagaactaaatgcagcat |
446 |
Q |
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| T |
39637350 |
agttaaaatgttagaactaaatgcagcat |
39637378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 39645619 - 39646046
Alignment:
| Q |
18 |
atagtgagtgaattatgaaattatgaaatgaagtgtttgcttcaagcaacaatgtatatacatgttctcacccagtataaataaaatgaaaagtcaaata |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39645619 |
atagtgagtgaattaggaaattatgaaatgaagtgtttgcttcaagcaacaatgtatatacatgttctcccccagtataaataaaatgaaaagtcaaata |
39645718 |
T |
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| Q |
118 |
aacttagaaaggagaaaccacattgtattgagcacattttgagtaatgaaatgcaataagtttattcctctnnnnnnntataaacttagaaagcaaaagg |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39645719 |
aacttagaaaggagaaaccacattgtattgaacacattttgagtaatgaaatgcaataagtttattcctctcaaaaaatataaacttagaaagcaaaagg |
39645818 |
T |
|
| Q |
218 |
aaggtttgattgttgattaaaatagaaaagatcatagagactttataatcagtaagttgtagaaaactatgtgaatcatacaaaaaaccactgctgccta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39645819 |
aaggtttgattgttgattaaaatagaaaagatcatagagactttataatcggtaagttgtagaaaactatgtgaatcatacaaaaaaccactgctgccta |
39645918 |
T |
|
| Q |
318 |
tcttctacaggttaaaaagattttagtggatggcaaattacattttattcttgtttttggccatttaatttgtgtttgtgatcgtggtggcattcactta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39645919 |
tcttctacaggttaaaaagattttagtggatggcaaattacattttattcttgtttttggccatttaa-ttgtgtttgtgatcgtggtggcattcactta |
39646017 |
T |
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| Q |
418 |
agttaaaatgttagaactaaatgcagcat |
446 |
Q |
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| T |
39646018 |
agttaaaatgttagaactaaatgcagcat |
39646046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 20426111 - 20426165
Alignment:
| Q |
134 |
accacattgtattgagcacattttgagtaatgaaatgcaataagtttattcctct |
188 |
Q |
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||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |
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| T |
20426111 |
accacattgtattgaacacatcttgataaatgaaatgcaataagtttattcctct |
20426165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 47142790 - 47142837
Alignment:
| Q |
141 |
tgtattgagcacattttgagtaatgaaatgcaataagtttattcctct |
188 |
Q |
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|||||||| |||||||||| |||||||||| |||||||||||||||| |
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| T |
47142790 |
tgtattgaacacattttgattaatgaaatgttataagtttattcctct |
47142837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 27024031 - 27023977
Alignment:
| Q |
134 |
accacattgtattgagcacattttgagtaatgaaatgcaataagtttattcctct |
188 |
Q |
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||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |
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| T |
27024031 |
accacattgtattgaacacatcttgataaatgaaatgcaataagtttattcctct |
27023977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 28625509 - 28625460
Alignment:
| Q |
139 |
attgtattgagcacattttgagtaatgaaatgcaataagtttattcctct |
188 |
Q |
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|||||||||| ||||||||||||||| |||||||||||| |||||||||| |
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| T |
28625509 |
attgtattgaacacattttgagtaataaaatgcaataagcttattcctct |
28625460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 203142 - 203088
Alignment:
| Q |
134 |
accacattgtattgagcacattttgagtaatgaaatgcaataagtttattcctct |
188 |
Q |
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|||| |||||||||| ||||| ||| |||||||||||||||| ||||||||||| |
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| T |
203142 |
accaaattgtattgaacacatcttgtttaatgaaatgcaataaatttattcctct |
203088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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