View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760_low_1 (Length: 681)
Name: NF5760_low_1
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760_low_1 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 597; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 38 - 681
Target Start/End: Original strand, 25893936 - 25894576
Alignment:
| Q |
38 |
gacctaaatttcataggcaaattagtctttggtgtggcgacattaatgtaggatcaacatggaagagccacatattcagttaaaatgtcatgtcatagtc |
137 |
Q |
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| T |
25893936 |
gacctaaatttcataggcaaattagtctctggtgtggcgac-ttgatgtaggatcaacatggaagagccacatattcagttaaaatgtcatgtcatagtc |
25894034 |
T |
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| Q |
138 |
cctaccgctaaaagtttacagtgagagtattttgggaaacgttttacaatttctgggatgtatttccaaatttgcaaaaatcaaggactatttctactgg |
237 |
Q |
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| T |
25894035 |
cctaccgctaaaagtttacagtgagagtattttggcaaacattttacaatttctgggatgtatttccaaatttgcaaaaatcaaggactatttctactgg |
25894134 |
T |
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| Q |
238 |
tgcttacaatttcgaggaacaatagtgaatttggcactacatattgattcaaaaccatgaatccttgatgcatttggcctaatcatcttctcacttatat |
337 |
Q |
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| T |
25894135 |
tgcttacaatttcgaggaacaatagtgactttcgcactacatattgattcaaaaccatgaatccttgatgcatttggcctaatcatcttctcacttatat |
25894234 |
T |
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| Q |
338 |
agtcctaacctagtacattcatcaattactgcaagacttattcattcacttgaattcaaccaaaaatcaaagtcacagttataataagccaatgtgtcct |
437 |
Q |
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| T |
25894235 |
agtcctaacctagtacattcatcaattactgcaagacttattcattcacttgaattcaaccaaaaatcaaagtcacagttataataagccaatgtgccct |
25894334 |
T |
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| Q |
438 |
gaacagctatctcaccatcccctctctttgttctataataaggaatggagagaatttggagaagaactaagaaaaagttaaagcaagttgaaatcaactt |
537 |
Q |
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| T |
25894335 |
gaacagctatctcaccatcccctctctttgttctataataaggaatggagagaatttggagaagaactaagaaaaag--aaagcaagttgaaatcaactt |
25894432 |
T |
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| Q |
538 |
acattgcataaggtgaaagtggtcttgactttggctcatggagattctgtccatcatcctttggggtatcttccactgaaagttgagctgggccattact |
637 |
Q |
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| T |
25894433 |
acattgcataaggtgaaagtggtcttgactttggctcatggagattctgtccatcatcctttggggtatcttccactgaaagttgagctgggccattact |
25894532 |
T |
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| Q |
638 |
tgattcttcctcaatcttggccacctcacccacagaagatgtgg |
681 |
Q |
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| T |
25894533 |
tgattcttcctcaatcttggccacctcacccacagaagatgtgg |
25894576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 520 - 681
Target Start/End: Original strand, 25893252 - 25893413
Alignment:
| Q |
520 |
gcaagttgaaatcaacttacattgcataaggtgaaagtggtcttgactttggctcatggagattctgtccatcatcctttggggtatcttccactgaaag |
619 |
Q |
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| T |
25893252 |
gcaagttggaatcaacttacattgcataaggtgaaagtggtcttgactttggttcatggagatcctgtccatcctcctttggtgtatcttccacggagag |
25893351 |
T |
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| Q |
620 |
ttgagctgggccattacttgattcttcctcaatcttggccacctcacccacagaagatgtgg |
681 |
Q |
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| T |
25893352 |
ttgggctggtccattgcttgatactgcatcaatattgggcacctcacccacagaagaagtgg |
25893413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25893924 - 25893862
Alignment:
| Q |
1 |
tcacaattgcaattattgaaaaatttgtccttgagatgacctaaatttcataggcaaattagt |
63 |
Q |
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| T |
25893924 |
tcacaattgcaattattgaaaaatttgtccttgagatgacctaaatttcataggcaaattagt |
25893862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 5217959 - 5217878
Alignment:
| Q |
179 |
ttttacaatttctgggatgtatttccaaatttgcaaaaatcaaggactatttctactggtgcttacaatttcgaggaacaat |
260 |
Q |
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| T |
5217959 |
ttttacagtttcggagatgtatttgtcaatttgcaaaaatgaaggattatctccactgatgcttacgatttcgaggaccaat |
5217878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27222637 - 27222709
Alignment:
| Q |
1 |
tcacaattgcaattattgaaaaatttgtccttgagatgacctaaatttcataggcaaattagtctttggtgtg |
73 |
Q |
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| T |
27222637 |
tcacaattgtaattactgacacatttgtccttgatatgacctaaaatccataggcaaattagtctttgatgtg |
27222709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 30994186 - 30994232
Alignment:
| Q |
183 |
acaatttctgggatgtatttccaaatttgcaaaaatcaaggactatt |
229 |
Q |
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| T |
30994186 |
acaatttctgggatgtgtttcccgattcgcaaaaatcaaggactatt |
30994232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 2505622 - 2505572
Alignment:
| Q |
14 |
tattgaaaaatttgtccttgagatgacctaaatttcataggcaaattagtc |
64 |
Q |
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| T |
2505622 |
tattgacaaatttgtcgttgagatgacccaaatttcataggcaaattagtc |
2505572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 9795466 - 9795385
Alignment:
| Q |
39 |
acctaaatttcataggcaaattagtctttggtgtggcgacattaatgtaggatcaacatggaagagccacatattcagttaa |
120 |
Q |
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| T |
9795466 |
acctaaatttcataggtatattaatctctagtgtggtgacattgatgtgggatcgacatggaggggccacatattcagttaa |
9795385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 9795488 - 9795578
Alignment:
| Q |
8 |
tgcaattattgaaaaatttgtccttgagatgacctaaatttcataggcaaattagtctttggtgtggcgacattaatgtaggatcaacatg |
98 |
Q |
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| T |
9795488 |
tgcaattcttgacaaatttgtttttaagatggcctaaatttcataagcaaattagtctctagtgagggaataataatgtgggatcaacatg |
9795578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 31135086 - 31135053
Alignment:
| Q |
31 |
ttgagatgacctaaatttcataggcaaattagtc |
64 |
Q |
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| T |
31135086 |
ttgatatgacctaaatttcataggcaaattagtc |
31135053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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