View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760_low_10 (Length: 381)
Name: NF5760_low_10
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 25894605 - 25894980
Alignment:
| Q |
1 |
tggtgaactaggaggctttaaatcgggatatctgcaggtatataaaatacacaaggaaaacaaaccacaaatttaggataccacggataaaagtgctaaa |
100 |
Q |
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| T |
25894605 |
tggtgaactaggaggctttaaatcgggatatctgcaggtatataaaatacacaaggaaaacaaaccacaaatttaggataccatggataaaagtgctaaa |
25894704 |
T |
|
| Q |
101 |
gtagttcataacaaggtatctgccggttttaaatcctcatagctgccaaattaaagaggtttagataggaaattagatgatagataatgtgtactaacat |
200 |
Q |
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| T |
25894705 |
gtagttcataacaaggtatctgcaggttttaaatcctcatagctgccaaattaaagaggtttagataggaaattagatgatagataatgtgtactaacat |
25894804 |
T |
|
| Q |
201 |
atgatatcaccacaaaattagaaagcggcttacgctgcaaaaggagaaagagactccttcccttttgaggaagttgttgtctgagaaatgacatctattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25894805 |
atgatatcaccacaaaattagaaagcggcttacgctgcaaaaggagaaagagactccttcccttttgaggaagttgttgtctgagaaatgacatttattt |
25894904 |
T |
|
| Q |
301 |
ctggaatgctacttggagcatctgaagaactaggtgttggcactgcatcactgatatttatctgcttcttctcact |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25894905 |
ctggaatgctacttggagcatctgaagaactaggtgttggcactgcatcactgatatttatctgcttcttgtcact |
25894980 |
T |
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