View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760_low_12 (Length: 347)
Name: NF5760_low_12
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 58 - 330
Target Start/End: Original strand, 2342925 - 2343197
Alignment:
| Q |
58 |
taccatccatgttgctattttaatttaacgtcatatggttgtttcaattctttcgttgtgaatcgtttaccatacatatacatataattgatctttggtg |
157 |
Q |
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| T |
2342925 |
taccatccatgttgctattttaatttaacgtcatatggttgtttcaattctttcgttgtgaatcgtttaccatacatatacatataattgatctttggtg |
2343024 |
T |
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| Q |
158 |
tcatcttgcaactaataaaaagggattcataaatgagtctagttctttctctttgtcaaagtcacctatagttggtagtatgaacgaatgcagaatgaga |
257 |
Q |
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| T |
2343025 |
tcatcttgcaactaataaaaagggattcataaatgagtctagttctttctctttgtcaaagtcacctatagttggtagtatgaacgaatgcagaatgaga |
2343124 |
T |
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| Q |
258 |
gtgttatgcttcatttggaatcaacgtgcagttcaaggttttttgcaatttttgctcaatctcttgttcttgg |
330 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2343125 |
gtgttaagcttcatttggaatcaacgtgcagttcaaggtttgttgcaatttttgctcaatctcttgttcttgg |
2343197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 207 - 330
Target Start/End: Original strand, 2340301 - 2340424
Alignment:
| Q |
207 |
tctttgtcaaagtcacctatagttggtagtatgaacgaatgcagaatgagagtgttatgcttcatttggaatcaacgtgcagttcaaggttttttgcaat |
306 |
Q |
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| T |
2340301 |
tctttgtcaaagtcacttatagttggtagtatgaatgaatgcaaaatgagagtgttaagcttcatttggaatgagcgtgtagttaaaggtttgttgcaat |
2340400 |
T |
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| Q |
307 |
ttttgctcaatctcttgttcttgg |
330 |
Q |
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| T |
2340401 |
ttttgctcaatctcttattcttgg |
2340424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 207 - 330
Target Start/End: Original strand, 7750307 - 7750430
Alignment:
| Q |
207 |
tctttgtcaaagtcacctatagttggtagtatgaacgaatgcagaatgagagtgttatgcttcatttggaatcaacgtgcagttcaaggttttttgcaat |
306 |
Q |
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||||| |||||||||| || || |||||||||||||| ||||| ||||||||||||| | ||| ||||||| | |||| |||||||||||| ||||||| |
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| T |
7750307 |
tctttatcaaagtcacttacaggtggtagtatgaacgcatgcaaaatgagagtgttaagtttccgttggaatgagcgtgtagttcaaggtttgttgcaat |
7750406 |
T |
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| Q |
307 |
ttttgctcaatctcttgttcttgg |
330 |
Q |
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| T |
7750407 |
ttttgctcaatctcttgttcttgg |
7750430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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