View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5760_low_13 (Length: 332)

Name: NF5760_low_13
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5760_low_13
NF5760_low_13
[»] chr1 (11 HSPs)
chr1 (18-332)||(39952872-39953185)
chr1 (244-332)||(22881569-22881655)
chr1 (288-332)||(14332637-14332681)
chr1 (288-332)||(30749860-30749904)
chr1 (288-332)||(30771311-30771355)
chr1 (286-332)||(23636042-23636088)
chr1 (286-324)||(39130760-39130798)
chr1 (286-332)||(40181891-40181937)
chr1 (288-332)||(1864875-1864919)
chr1 (300-332)||(15323183-15323215)
chr1 (288-332)||(22515882-22515926)
[»] chr7 (8 HSPs)
chr7 (244-332)||(9482954-9483039)
chr7 (288-332)||(18213028-18213072)
chr7 (288-332)||(3721113-3721157)
chr7 (288-332)||(15680829-15680873)
chr7 (298-332)||(15902842-15902876)
chr7 (286-332)||(20549811-20549857)
chr7 (300-332)||(32308140-32308172)
chr7 (288-332)||(39138464-39138508)
[»] chr6 (7 HSPs)
chr6 (286-332)||(7265586-7265632)
chr6 (288-332)||(5732505-5732549)
chr6 (298-332)||(7086815-7086849)
chr6 (288-332)||(7377999-7378043)
chr6 (288-332)||(19040372-19040416)
chr6 (288-324)||(24614438-24614474)
chr6 (288-332)||(33001284-33001328)
[»] chr2 (6 HSPs)
chr2 (286-332)||(20242720-20242766)
chr2 (288-332)||(20922923-20922967)
chr2 (288-331)||(5367213-5367256)
chr2 (293-332)||(34784982-34785021)
chr2 (288-332)||(30404845-30404889)
chr2 (288-332)||(31018610-31018654)
[»] chr8 (5 HSPs)
chr8 (288-332)||(13844591-13844635)
chr8 (288-332)||(33405379-33405423)
chr8 (291-332)||(4786336-4786377)
chr8 (287-332)||(34897105-34897150)
chr8 (288-332)||(20873089-20873133)
[»] chr5 (5 HSPs)
chr5 (288-332)||(18421836-18421880)
chr5 (288-332)||(43564901-43564945)
chr5 (289-332)||(16203791-16203834)
chr5 (287-332)||(33178045-33178090)
chr5 (288-332)||(28588669-28588713)
[»] chr3 (9 HSPs)
chr3 (288-332)||(7928470-7928514)
chr3 (288-332)||(40993330-40993374)
chr3 (288-332)||(49505149-49505193)
chr3 (293-332)||(28678323-28678362)
chr3 (286-332)||(25093522-25093568)
chr3 (244-285)||(29508526-29508567)
chr3 (288-332)||(8789545-8789589)
chr3 (300-332)||(32804547-32804579)
chr3 (288-332)||(55401095-55401139)
[»] chr4 (7 HSPs)
chr4 (290-332)||(10499267-10499309)
chr4 (290-332)||(36509089-36509131)
chr4 (299-332)||(13134470-13134503)
chr4 (288-332)||(12895269-12895313)
chr4 (288-332)||(35157980-35158024)
chr4 (288-332)||(40179631-40179675)
chr4 (288-332)||(54580018-54580062)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 39952872 - 39953185
Alignment:
Q  18 gtgatatctaagtaaagaaacagtaaggaaaaagaagatgagtgaaagtactatgaagatgaagaatcaaccgtcacagtcacactggtggtggcttgac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39952872 gtgatatctaagtaaagaaacagtaaggaaaaagaagatgagtgaaagtactatgaagatgaagaatcaaccgtcacagtcacactggtggtggcttgat 39952971  T
Q  118 gacaacaccgccgttagaagatcaacatggcttcaatctacacttactggtatactaatccacttcctttccctccttttattcatttgagtttctgttt 217  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  39952972 gacaacaccaccgttagaagatcagcatggcttcaatctacacttactggtatact-atccacttcctttccttccttttattcatttgagtttctgttt 39953070  T
Q  218 aaaatatttttaattagtgttaggccatgaagtacggacacttcttgtattagacatgtcccggtgtcttgtgtccgacgccgacacatacaattacact 317  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39953071 aaaatatttttaattagtgttaggccatgaagcatggacacttcttgtattagacatgtcccggtgtcttgtgtccgacaccgacacatacaattacact 39953170  T
Q  318 aaattatgtgatttt 332  Q
    |||||||||||||||    
T  39953171 aaattatgtgatttt 39953185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 22881569 - 22881655
Alignment:
Q  244 atgaagtacggacacttcttgtattagacatgtcccggtgtcttgtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    |||||| ||||||||| || | ||||||| ||||||||||||  ||||||||| ||||||| |  ||||||||||||||||||||||||    
T  22881569 atgaagcacggacactcctcggattagacgtgtcccggtgtc--gtgtccgacaccgacacttgtaattacactaaattatgtgatttt 22881655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 14332637 - 14332681
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||| ||||| ||||||||||||||||||||||||    
T  14332637 gtgtccgacaccgagacatataattacactaaattatgtgatttt 14332681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 30749904 - 30749860
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||    
T  30749904 gtgtccgacaccgacacatataattacactgaattatgtgatttt 30749860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 30771355 - 30771311
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||    
T  30771355 gtgtccgacaccgacacatataattacactgaattatgtgatttt 30771311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 23636042 - 23636088
Alignment:
Q  286 ttgtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||| ||| |||||||||||||||||||| |||||||| |||||    
T  23636042 ttgtgtctgacaccgacacatacaattacactgaattatgtaatttt 23636088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 39130760 - 39130798
Alignment:
Q  286 ttgtgtccgacgccgacacatacaattacactaaattat 324  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  39130760 ttgtgtccgacaccgacacatataattacactaaattat 39130798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 40181937 - 40181891
Alignment:
Q  286 ttgtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||||| |||| ||||| ||||||||| ||||||||||||||    
T  40181937 ttgtgtccgacaccgatacatataattacactgaattatgtgatttt 40181891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 1864875 - 1864919
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    |||||| || |||||||||| ||||||||| ||||||||||||||    
T  1864875 gtgtccaacaccgacacatataattacactgaattatgtgatttt 1864919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 15323215 - 15323183
Alignment:
Q  300 gacacatacaattacactaaattatgtgatttt 332  Q
    ||||| |||||||||||||||||||||||||||    
T  15323215 gacacttacaattacactaaattatgtgatttt 15323183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 22515882 - 22515926
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| ||||||| |  ||||||||||||||||||||||||    
T  22515882 gtgtccgacaccgacacttgtaattacactaaattatgtgatttt 22515926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 9483039 - 9482954
Alignment:
Q  244 atgaagtacggacacttcttgtattagacatgtcccggtgtcttgtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    |||||| |||||||||||| ||||||| | ||||||||||||  | ||||||| |||||||||| ||||||||| |||| |||||||||    
T  9483039 atgaagcacggacacttctcgtattag-cgtgtcccggtgtc--gcgtccgacaccgacacatataattacactgaattgtgtgatttt 9482954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 18213028 - 18213072
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||    
T  18213028 gtgtccgacaccgacacatataattacactaaattatgtgatttt 18213072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 3721157 - 3721113
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  3721157 gtgtccgacaccgacacatataattatactaaattatgtgatttt 3721113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 15680873 - 15680829
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||    
T  15680873 gtgtccgacaccgacacttataattacactaaattatgtgatttt 15680829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 15902876 - 15902842
Alignment:
Q  298 ccgacacatacaattacactaaattatgtgatttt 332  Q
    |||||||||| ||||||||||||||||||||||||    
T  15902876 ccgacacatataattacactaaattatgtgatttt 15902842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 20549857 - 20549811
Alignment:
Q  286 ttgtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||||| |||||||||| ||||||||| ||||| ||||||||    
T  20549857 ttgtgtccgacaccgacacatataattacactgaattacgtgatttt 20549811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 32308172 - 32308140
Alignment:
Q  300 gacacatacaattacactaaattatgtgatttt 332  Q
    |||||||||||||||||| ||||||||||||||    
T  32308172 gacacatacaattacactgaattatgtgatttt 32308140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 39138508 - 39138464
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||| ||| ||||||||| ||||||||||||||    
T  39138508 gtgtccgacaccgacatatataattacactgaattatgtgatttt 39138464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 7265586 - 7265632
Alignment:
Q  286 ttgtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  7265586 ttgtgtccgacaccgacacatataattacactgaattatgtgatttt 7265632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 5732505 - 5732549
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||||||| |||||||||||| |||||||||||    
T  5732505 gtgtccgacaccgacacatataattacactaaaatatgtgatttt 5732549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 7086849 - 7086815
Alignment:
Q  298 ccgacacatacaattacactaaattatgtgatttt 332  Q
    |||||||||| ||||||||||||||||||||||||    
T  7086849 ccgacacatataattacactaaattatgtgatttt 7086815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 7378043 - 7377999
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||||||| ||||||| | ||||||||||||||    
T  7378043 gtgtccgacaccgacacatataattacattgaattatgtgatttt 7377999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 19040416 - 19040372
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| | |||||||| ||||||||| ||||||||||||||    
T  19040416 gtgtccgacacagacacatataattacactgaattatgtgatttt 19040372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 24614474 - 24614438
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattat 324  Q
    ||||||||| || ||||||||||||||||||||||||    
T  24614474 gtgtccgacaccaacacatacaattacactaaattat 24614438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 33001284 - 33001328
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||||||| ||||||| | ||||||||||||||    
T  33001284 gtgtccgacaccgacacatataattacatttaattatgtgatttt 33001328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 20242720 - 20242766
Alignment:
Q  286 ttgtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  20242720 ttgtgtccgacaccgacacatataattacactgaattatgtgatttt 20242766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 20922923 - 20922967
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||    
T  20922923 gtgtccgacacagacacatataattacactaaattatgtgatttt 20922967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 5367256 - 5367213
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgattt 331  Q
    ||||||||| |||||||||| ||||||||| |||||||||||||    
T  5367256 gtgtccgacaccgacacatataattacactgaattatgtgattt 5367213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 34784982 - 34785021
Alignment:
Q  293 cgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  34784982 cgacaccgacacatataattacactaaattatgtgatttt 34785021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 30404845 - 30404889
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||||||||||| |  ||||||||| ||||||||||||||    
T  30404845 gtgtccgacgccgacacttgtaattacactgaattatgtgatttt 30404889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 31018654 - 31018610
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| ||||||| || ||||||||||||| ||||||||||    
T  31018654 gtgtccgacaccgacacctataattacactaaatcatgtgatttt 31018610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 13844591 - 13844635
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||    
T  13844591 gtgtccgacaccgacacatataattacactcaattatgtgatttt 13844635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 33405379 - 33405423
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||    
T  33405379 gtgtccgacaccgacacatataattacactaaattatgtgttttt 33405423  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 4786336 - 4786377
Alignment:
Q  291 tccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    |||||| |||||||||| ||||||||| ||||||||||||||    
T  4786336 tccgacaccgacacatataattacactgaattatgtgatttt 4786377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 34897150 - 34897105
Alignment:
Q  287 tgtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||||  ||||||||| ||||||||| ||||||||||||||    
T  34897150 tgtgtccgacatcgacacatataattacactgaattatgtgatttt 34897105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 20873133 - 20873089
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| ||||||| |  ||||||||||||||||||||||||    
T  20873133 gtgtccgacaccgacacttgtaattacactaaattatgtgatttt 20873089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 18421836 - 18421880
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    |||||||||||||||||||| |||||||||  |||||||||||||    
T  18421836 gtgtccgacgccgacacatataattacactggattatgtgatttt 18421880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 43564945 - 43564901
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||    
T  43564945 gtgtccgacaccgacacttataattacactaaattatgtgatttt 43564901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 16203791 - 16203834
Alignment:
Q  289 tgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||    
T  16203791 tgtccgacaccgacacatataattacactaaattatgagatttt 16203834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 33178090 - 33178045
Alignment:
Q  287 tgtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    |||||||||| ||||||| |  ||||||||||||||||||||||||    
T  33178090 tgtgtccgacaccgacacttgtaattacactaaattatgtgatttt 33178045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 28588669 - 28588713
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| ||||||| || ||||||||| ||||||||||||||    
T  28588669 gtgtccgacaccgacacctataattacactgaattatgtgatttt 28588713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 7928514 - 7928470
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||    
T  7928514 gtgtccgacaccgacacatataattacactgaattatgtgatttt 7928470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 40993330 - 40993374
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||    
T  40993330 gtgtccgacaccgacacatataattacactgaattatgtgatttt 40993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 49505149 - 49505193
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||    
T  49505149 gtgtccgacactgacacatataattacactaaattatgtgatttt 49505193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 28678362 - 28678323
Alignment:
Q  293 cgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  28678362 cgacaccgacacatacaattatactaaattatgtgatttt 28678323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 25093568 - 25093522
Alignment:
Q  286 ttgtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||||| |||||||||| ||||||||| |||| |||||||||    
T  25093568 ttgtgtccgacaccgacacatataattacactgaattgtgtgatttt 25093522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 29508567 - 29508526
Alignment:
Q  244 atgaagtacggacacttcttgtattagacatgtcccggtgtc 285  Q
    |||||| |||||||||||||| ||||||| ||||||||||||    
T  29508567 atgaagcacggacacttcttggattagacgtgtcccggtgtc 29508526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 8789545 - 8789589
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| |||||||||| ||||||||  ||||||||||||||    
T  8789545 gtgtccgacaccgacacatataattacacggaattatgtgatttt 8789589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 32804547 - 32804579
Alignment:
Q  300 gacacatacaattacactaaattatgtgatttt 332  Q
    |||||||| ||||||||||||||||||||||||    
T  32804547 gacacatataattacactaaattatgtgatttt 32804579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 55401139 - 55401095
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| ||||||| |  ||||||||||||||||||||||||    
T  55401139 gtgtccgacaccgacacttgtaattacactaaattatgtgatttt 55401095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 10499267 - 10499309
Alignment:
Q  290 gtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||| | |||||||| ||||||||||||||||||||||||    
T  10499267 gtccgacactgacacatataattacactaaattatgtgatttt 10499309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 36509089 - 36509131
Alignment:
Q  290 gtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    |||||||||||||||||| |||||||||  |||||||||||||    
T  36509089 gtccgacgccgacacatataattacacttgattatgtgatttt 36509131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 13134503 - 13134470
Alignment:
Q  299 cgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| ||||||||||||||||||||||||    
T  13134503 cgacacatataattacactaaattatgtgatttt 13134470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 12895269 - 12895313
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| ||||||| || |||||||| |||||||||||||||    
T  12895269 gtgtccgacaccgacacttataattacacaaaattatgtgatttt 12895313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 35157980 - 35158024
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||| ||| ||||||| || ||||||||||||||||||||||||    
T  35157980 gtgtcagacaccgacacttataattacactaaattatgtgatttt 35158024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 40179631 - 40179675
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| ||||| |||| ||||||||| ||||||||||||||    
T  40179631 gtgtccgacaccgacgcatataattacactgaattatgtgatttt 40179675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 54580018 - 54580062
Alignment:
Q  288 gtgtccgacgccgacacatacaattacactaaattatgtgatttt 332  Q
    ||||||||| ||||||| || ||||||||| ||||||||||||||    
T  54580018 gtgtccgacaccgacacttataattacactgaattatgtgatttt 54580062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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