View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5760_low_14 (Length: 310)

Name: NF5760_low_14
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5760_low_14
NF5760_low_14
[»] chr1 (1 HSPs)
chr1 (10-310)||(44973530-44973827)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 44973530 - 44973827
Alignment:
Q  10 aagaaaataatgagttgttaaataaaatgtatatcatttttgcatttataaacacaaaaggctcacggactatatatataagtgctgattgcttgtaata 109  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  44973530 aagaaaataatgagttgttaaataaaatgtatatgattgttgcatttataaacacaaaaggctcacggactata----taagtgctgattgcttgtaata 44973625  T
Q  110 cagtataattccatgataggaaaaatagtaggataataatgcaaccaccaaaaggtacaaaacatttttaattattcctttatttttgtctctctttatc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973626 cagtataattccatgataggaaaaatagtaggataataatgcaaccaccaaaaggtacaaaacatttttaattattcctttatttttgtctctctttatc 44973725  T
Q  210 atccacaccaacgttatac-attccaacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttagc 308  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44973726 atccacaccaacgttatactctcccaacgcatggaaacacaaacactcattgttccatcccaccaaaaccttaatttcactccaacttctctcccttagc 44973825  T

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