View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760_low_19 (Length: 235)
Name: NF5760_low_19
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760_low_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2734348 - 2734582
Alignment:
| Q |
1 |
attagttattcatgttcatagcaataaacaacataaaaagaaaacaaacatgatagagttccatctttgccgatgttgttcctcaaatcctttccaatcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2734348 |
attagttattcatgttcatagcaataaacaacataaaaagaaaacaagcatgatagagttccatcgttgccgatgttgttcctcaaatcctttccaatcg |
2734447 |
T |
|
| Q |
101 |
ttgttgctgtgttcccatgcccatttgcatctcttgttcacctcaatccactataatatgctgcgcacaagggcaacatgctttattcagcctcaatata |
200 |
Q |
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|||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2734448 |
ttgttgttgtgttcccatgcccatttgcatctctcgttcccctcaatccactataatctgctccgcacaagggcaacatgctttattcagcctcaatata |
2734547 |
T |
|
| Q |
201 |
tgggaattgcagaattggggactcaataagggtgc |
235 |
Q |
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||||||||||||| ||||||| ||||||||||||| |
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| T |
2734548 |
tgggaattgcagatttggggagtcaataagggtgc |
2734582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 41159322 - 41159359
Alignment:
| Q |
7 |
tattcatgttcatagcaataaacaacataaaaagaaaa |
44 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
41159322 |
tattcatgttcataaaaataaacaacataaaaagaaaa |
41159359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 19868645 - 19868607
Alignment:
| Q |
10 |
tcatgttcatagcaataaacaacataaaaagaaaacaaa |
48 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
19868645 |
tcatgttcatagaaataaacaacataaaaagaaaacaaa |
19868607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 11270724 - 11270690
Alignment:
| Q |
10 |
tcatgttcatagcaataaacaacataaaaagaaaa |
44 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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|
| T |
11270724 |
tcatgttcatagaaataaacaacataaaaagaaaa |
11270690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 25491866 - 25491828
Alignment:
| Q |
10 |
tcatgttcatagcaataaacaacataaaaagaaaacaaa |
48 |
Q |
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|||||||||||| | |||||||||||||||||||||||| |
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| T |
25491866 |
tcatgttcatagaattaaacaacataaaaagaaaacaaa |
25491828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 9765344 - 9765306
Alignment:
| Q |
10 |
tcatgttcatagcaataaacaacataaaaagaaaacaaa |
48 |
Q |
| |
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|||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
9765344 |
tcatattcatagaaataaacaacataaaaagaaaacaaa |
9765306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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