View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760_low_23 (Length: 206)
Name: NF5760_low_23
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760_low_23 |
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| [»] scaffold0053 (1 HSPs) |
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Alignment Details
Target: scaffold0053 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 26972 - 27177
Alignment:
| Q |
1 |
atcttttgtctcctcatttggatttttgttgctacaatctgtgaaaaagtcacacttgaagtgttaacaatctctaatgttttaaggatttttactttgt |
100 |
Q |
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| T |
26972 |
atcttttgtctcctcatttggatttttgttgctacaatctgtgaaaaagtcacacttgaagtgttaacaatctcgaatgtttaaaggatttttactttgt |
27071 |
T |
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| Q |
101 |
tcaagcatatcgacgnnnnnnnaagagaccaaagaactatactaaagaaaacaacacaaggcacaagtggtgtcaaggaaacataatactataaatcaca |
200 |
Q |
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| T |
27072 |
tcaagcgtatcgacgtttttttaagagaccaaagaactgtactaaagaaaacaacacaaggcacaagtggtgtcaaggaaacataatactataaatcaca |
27171 |
T |
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| Q |
201 |
aatgac |
206 |
Q |
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|||||| |
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| T |
27172 |
aatgac |
27177 |
T |
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