View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760_low_3 (Length: 680)
Name: NF5760_low_3
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760_low_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 633; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 1 - 680
Target Start/End: Original strand, 25893900 - 25894576
Alignment:
| Q |
1 |
aatttttcaataattgcaattgtgaaggtctctgaagacctaaatttcataggcaaattagtctttggtgtggcgacattaatgtaggatcaacatggaa |
100 |
Q |
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| T |
25893900 |
aatttttcaataattgcaattgtgaaggtctctgaagacctaaatttcataggcaaattagtctctggtgtggcgac-ttgatgtaggatcaacatggaa |
25893998 |
T |
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| Q |
101 |
gagccacatattcagttaaaatgtcatgtcatagtccctaccgctaaaagtttacagtgagagtattttgggaaacgttttacaatttctgggatgtatt |
200 |
Q |
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| T |
25893999 |
gagccacatattcagttaaaatgtcatgtcatagtccctaccgctaaaagtttacagtgagagtattttggcaaacattttacaatttctgggatgtatt |
25894098 |
T |
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| Q |
201 |
tccaaatttgcaaaaatcaaggactatttctactggtgcttacaatttcgaggaacaatagtgaatttggcactacatattgattcaaaaccatgaatcc |
300 |
Q |
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| T |
25894099 |
tccaaatttgcaaaaatcaaggactatttctactggtgcttacaatttcgaggaacaatagtgactttcgcactacatattgattcaaaaccatgaatcc |
25894198 |
T |
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| Q |
301 |
ttgatgcatttggcctaatcatcttctcacttatatagtcctaacctagtacattcatcaattactgcaagacttattcattcacttgaattcaaccaaa |
400 |
Q |
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| T |
25894199 |
ttgatgcatttggcctaatcatcttctcacttatatagtcctaacctagtacattcatcaattactgcaagacttattcattcacttgaattcaaccaaa |
25894298 |
T |
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| Q |
401 |
aatcaaagtcacagttataataagccaatgtgtcctgaacagctatctcaccatcccctctctttgttctataataaggaatggagagaatttggagaag |
500 |
Q |
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| T |
25894299 |
aatcaaagtcacagttataataagccaatgtgccctgaacagctatctcaccatcccctctctttgttctataataaggaatggagagaatttggagaag |
25894398 |
T |
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| Q |
501 |
aactaagaaaaagttaaagcaagttgaaatcaacttacattgcataaggtgaaagtggtcttgactttggctcatggagattctgtccatcatcctttgg |
600 |
Q |
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| T |
25894399 |
aactaagaaaaag--aaagcaagttgaaatcaacttacattgcataaggtgaaagtggtcttgactttggctcatggagattctgtccatcatcctttgg |
25894496 |
T |
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| Q |
601 |
ggtatcttccactgaaagttgagctgggccattacttgattcttcctcaatcttggccacctcacccacagaagatgtgg |
680 |
Q |
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| T |
25894497 |
ggtatcttccactgaaagttgagctgggccattacttgattcttcctcaatcttggccacctcacccacagaagatgtgg |
25894576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 519 - 680
Target Start/End: Original strand, 25893252 - 25893413
Alignment:
| Q |
519 |
gcaagttgaaatcaacttacattgcataaggtgaaagtggtcttgactttggctcatggagattctgtccatcatcctttggggtatcttccactgaaag |
618 |
Q |
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| T |
25893252 |
gcaagttggaatcaacttacattgcataaggtgaaagtggtcttgactttggttcatggagatcctgtccatcctcctttggtgtatcttccacggagag |
25893351 |
T |
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| Q |
619 |
ttgagctgggccattacttgattcttcctcaatcttggccacctcacccacagaagatgtgg |
680 |
Q |
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| T |
25893352 |
ttgggctggtccattgcttgatactgcatcaatattgggcacctcacccacagaagaagtgg |
25893413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 5217959 - 5217878
Alignment:
| Q |
178 |
ttttacaatttctgggatgtatttccaaatttgcaaaaatcaaggactatttctactggtgcttacaatttcgaggaacaat |
259 |
Q |
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| T |
5217959 |
ttttacagtttcggagatgtatttgtcaatttgcaaaaatgaaggattatctccactgatgcttacgatttcgaggaccaat |
5217878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 9795466 - 9795385
Alignment:
| Q |
38 |
acctaaatttcataggcaaattagtctttggtgtggcgacattaatgtaggatcaacatggaagagccacatattcagttaa |
119 |
Q |
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| T |
9795466 |
acctaaatttcataggtatattaatctctagtgtggtgacattgatgtgggatcgacatggaggggccacatattcagttaa |
9795385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 30994186 - 30994232
Alignment:
| Q |
182 |
acaatttctgggatgtatttccaaatttgcaaaaatcaaggactatt |
228 |
Q |
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| T |
30994186 |
acaatttctgggatgtgtttcccgattcgcaaaaatcaaggactatt |
30994232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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