View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760_low_5 (Length: 453)
Name: NF5760_low_5
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 28877732 - 28877439
Alignment:
| Q |
8 |
cagcacagatctcaaagaataatgcagcacaagtaataaagtattcacattcacattgtttgaaaatgaaaacctgttgcattgtgaacattcagaattc |
107 |
Q |
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| T |
28877732 |
cagcacagatctcaaagaataatgcagcacaagtaataaagtattcatattcacattgtttgaaaatgaaaacttgttgcattgtgaacattcagaattc |
28877633 |
T |
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| Q |
108 |
agaatatagaaccattaaataaccctaatcccaatgcattttaaacctaatttttctaaaaaccattgagaaaaattccattttcttcattctttgtatc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28877632 |
agaatatagaaccattaaataaccctaatcccaatgcattttaaacctaatttttctaaaaaccattgagaaaaattccattttcttcattctttgtatc |
28877533 |
T |
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| Q |
208 |
aaattttgagaactcaacagagaataataccatacctatctgaaatcccagaaaccaatacaagaataatgagaaaaccatgaagcaaaaattg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28877532 |
aaattttgagaactcaacagagaataataccatacctatctgaaatcccagaaaccaatacaagaataatgagaaaaccatgaagcaaaaattg |
28877439 |
T |
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