View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760_low_6 (Length: 421)
Name: NF5760_low_6
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 44974239 - 44973857
Alignment:
| Q |
20 |
ttaggcttaagaagagaagcagaaaaagcaaaagtttcagaaacagttaacataggaagacatgcatcatgttgaggaacataagcagagagttttctga |
119 |
Q |
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| T |
44974239 |
ttaggcttaagaagagaagcagaaaaagcaaaagtttcagaaacagttaacataggaagacatgcatcatgttgaggaacataagcagagagttttctga |
44974140 |
T |
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| Q |
120 |
atgtggaagggttagtgataggtgaagagttaagggaaagtgtaccacttaagggtaatcttctagctgaaagaatgtctagaagagttgattttcctgc |
219 |
Q |
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| T |
44974139 |
atgtagaagggttagtgataggtgaagagttaagagaaagtgtaccacttaagggtaatcttctagctgaaagaatgtctagaagagttgattttcctgc |
44974040 |
T |
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| Q |
220 |
accacttggaccaacaatggcaagaatctcagaagggtatgctgtgagggaaacatctttgaggatgtagtttnnnnnnnttggtgtacaatgtttgaag |
319 |
Q |
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| T |
44974039 |
accacttggaccaacaatggcaagaatctcagaagggtatgctgtgagggaaacatctttgaggatgtagtttgggggggttggtgtacaatgtttgaag |
44973940 |
T |
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| Q |
320 |
aagagaaatggtgcaatgatggagttgtttgtttgtaggtttttggagtaagagattgaagttgctgttagtttgtatgtttt |
402 |
Q |
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| T |
44973939 |
aagagaaatggtgcaatgatggtgttgtttgtttgtaggtttttggagtaagagattgaagttgctgttagtttgtatgtttt |
44973857 |
T |
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