View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5760_low_7 (Length: 416)

Name: NF5760_low_7
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5760_low_7
NF5760_low_7
[»] chr4 (3 HSPs)
chr4 (38-404)||(25893936-25894301)
chr4 (1-63)||(25893862-25893924)
chr4 (179-260)||(5217878-5217959)
[»] chr8 (2 HSPs)
chr8 (1-73)||(27222637-27222709)
chr8 (183-229)||(30994186-30994232)
[»] chr2 (1 HSPs)
chr2 (14-64)||(2505572-2505622)
[»] chr5 (2 HSPs)
chr5 (39-120)||(9795385-9795466)
chr5 (8-98)||(9795488-9795578)
[»] chr1 (1 HSPs)
chr1 (31-64)||(31135053-31135086)


Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 38 - 404
Target Start/End: Original strand, 25893936 - 25894301
Alignment:
Q  38 gacctaaatttcataggcaaattagtctttggtgtggcgacattaatgtaggatcaacatggaagagccacatattcagttaaaatgtcatgtcatagtc 137  Q
    |||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25893936 gacctaaatttcataggcaaattagtctctggtgtggcgac-ttgatgtaggatcaacatggaagagccacatattcagttaaaatgtcatgtcatagtc 25894034  T
Q  138 cctaccgctaaaagtttacagtgagagtattttgggaaacgttttacaatttctgggatgtatttccaaatttgcaaaaatcaaggactatttctactgg 237  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25894035 cctaccgctaaaagtttacagtgagagtattttggcaaacattttacaatttctgggatgtatttccaaatttgcaaaaatcaaggactatttctactgg 25894134  T
Q  238 tgcttacaatttcgaggaacaatagtgaatttggcactacatattgattcaaaaccatgaatccttgatgcatttggcctaatcatcttctcacttatat 337  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25894135 tgcttacaatttcgaggaacaatagtgactttcgcactacatattgattcaaaaccatgaatccttgatgcatttggcctaatcatcttctcacttatat 25894234  T
Q  338 agtcctaacctagtacattcatcaattactgcaagacttattcattcacttgaattcaaccaaaaat 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25894235 agtcctaacctagtacattcatcaattactgcaagacttattcattcacttgaattcaaccaaaaat 25894301  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25893924 - 25893862
Alignment:
Q  1 tcacaattgcaattattgaaaaatttgtccttgagatgacctaaatttcataggcaaattagt 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25893924 tcacaattgcaattattgaaaaatttgtccttgagatgacctaaatttcataggcaaattagt 25893862  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 5217959 - 5217878
Alignment:
Q  179 ttttacaatttctgggatgtatttccaaatttgcaaaaatcaaggactatttctactggtgcttacaatttcgaggaacaat 260  Q
    ||||||| |||| | |||||||||   ||||||||||||| ||||| ||| || |||| ||||||| |||||||||| ||||    
T  5217959 ttttacagtttcggagatgtatttgtcaatttgcaaaaatgaaggattatctccactgatgcttacgatttcgaggaccaat 5217878  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27222637 - 27222709
Alignment:
Q  1 tcacaattgcaattattgaaaaatttgtccttgagatgacctaaatttcataggcaaattagtctttggtgtg 73  Q
    ||||||||| ||||| ||| | |||||||||||| |||||||||| | |||||||||||||||||||| ||||    
T  27222637 tcacaattgtaattactgacacatttgtccttgatatgacctaaaatccataggcaaattagtctttgatgtg 27222709  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 30994186 - 30994232
Alignment:
Q  183 acaatttctgggatgtatttccaaatttgcaaaaatcaaggactatt 229  Q
    |||||||||||||||| |||||  ||| |||||||||||||||||||    
T  30994186 acaatttctgggatgtgtttcccgattcgcaaaaatcaaggactatt 30994232  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 2505622 - 2505572
Alignment:
Q  14 tattgaaaaatttgtccttgagatgacctaaatttcataggcaaattagtc 64  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||||    
T  2505622 tattgacaaatttgtcgttgagatgacccaaatttcataggcaaattagtc 2505572  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 9795466 - 9795385
Alignment:
Q  39 acctaaatttcataggcaaattagtctttggtgtggcgacattaatgtaggatcaacatggaagagccacatattcagttaa 120  Q
    |||||||||||||||| | |||| ||| | |||||| |||||| |||| ||||| ||||||| | |||||||||||||||||    
T  9795466 acctaaatttcataggtatattaatctctagtgtggtgacattgatgtgggatcgacatggaggggccacatattcagttaa 9795385  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 9795488 - 9795578
Alignment:
Q  8 tgcaattattgaaaaatttgtccttgagatgacctaaatttcataggcaaattagtctttggtgtggcgacattaatgtaggatcaacatg 98  Q
    ||||||| |||| ||||||||  || ||||| ||||||||||||| |||||||||||| | ||| ||  | | |||||| |||||||||||    
T  9795488 tgcaattcttgacaaatttgtttttaagatggcctaaatttcataagcaaattagtctctagtgagggaataataatgtgggatcaacatg 9795578  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 31135086 - 31135053
Alignment:
Q  31 ttgagatgacctaaatttcataggcaaattagtc 64  Q
    |||| |||||||||||||||||||||||||||||    
T  31135086 ttgatatgacctaaatttcataggcaaattagtc 31135053  T

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