View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5760_low_9 (Length: 392)
Name: NF5760_low_9
Description: NF5760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5760_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 25893496 - 25893885
Alignment:
| Q |
1 |
atttggtgcactaggagatggtgaactaggaggctttaaatcaggatacctgtacacaagaaaaacaaaccacaaagttttgataccacaaatagaagtg |
100 |
Q |
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| T |
25893496 |
atttggtgcattaggagatggtgaactaggaggctttaaatcaggatacctatacaaaagaaaaacaaaccaca--gttttgataccacaaatagaagtg |
25893593 |
T |
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| Q |
101 |
ctaaagttgttaataacaagagttgaaatttgatcttacatatcataagttagaaactgagtaaatcgaaaaacctgtcctcaaaattgtatgatttgat |
200 |
Q |
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| T |
25893594 |
ctaaagttgttaataacaagagttgaaatttgatcttacatatcataagttagaaactgagtaaatcgaaaaagctgtcctcaaaattgtatgatttgat |
25893693 |
T |
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| Q |
201 |
caaaatactccctcatttttgcaaattgataaatacatccatgaaattgtaaaatgctgttcaaaatagtcccttagtaatcttctttcttaagaggcta |
300 |
Q |
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| T |
25893694 |
caaaatactccctcatttttgcaaattgataaatacatccatgaaattgtaaaatgttgttcaaaatagtcccttagtaatcttctttcttaagaggcta |
25893793 |
T |
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| Q |
301 |
taatgtgacgcgttaactgaagttatcacactgcaatctgattgcacatcaaggccagctcaataggaactaatttgcctatgaaatttagg |
392 |
Q |
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| T |
25893794 |
taatgtgacgcgttaactgaagttatcacactgcaatctgattgcacatcaaggccagctcactaggaactaatttgcctatgaaatttagg |
25893885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 25894589 - 25894634
Alignment:
| Q |
3 |
ttggtgcactaggagatggtgaactaggaggctttaaatcaggata |
48 |
Q |
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| T |
25894589 |
ttggtgcattaggagatggtgaactaggaggctttaaatcgggata |
25894634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 10096635 - 10096674
Alignment:
| Q |
215 |
atttttgcaaattgataaatacatccatgaaattgtaaaa |
254 |
Q |
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| T |
10096635 |
atttttgcaaattgataaatacatcgatgaaattgtaaaa |
10096674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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