View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761-Insertion-1 (Length: 1160)
Name: NF5761-Insertion-1
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 1e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 121 - 451
Target Start/End: Original strand, 34704154 - 34704497
Alignment:
| Q |
121 |
ttccctccacccagttgaaatttaaattgcttattgttgtgacttcctgattttcggccttctaatata-aaacgtgagatgcatgtattcatatgtgtg |
219 |
Q |
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|||||||||| |||||||||| || | |||||||||| ||||||||||| ||||||||||| || | ||||||||||||||||||||| | |||||| |
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| T |
34704154 |
ttccctccacttagttgaaattcaagtagcttattgttttgacttcctgaatttcggccttccaaacaataaacgtgagatgcatgtattcttttgtgtg |
34704253 |
T |
|
| Q |
220 |
ctatttaattcgacctttgccataccc-atgcacaataaatcagctatccacttctccatgctttttctgtttccaacacatctcttattccttcagtta |
318 |
Q |
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|||||||| || ||||||||||||||| || || |||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
34704254 |
ctatttaactcaacctttgccataccccatacattgtaaatcggctatccacttctccatgttgtttctgtttccaacacatctcttattccttcagtta |
34704353 |
T |
|
| Q |
319 |
tgaattatatatataactaacaatacacaccatgtctattctcattcaaaaatccttctgcctccttca--------------tatttcgatttttcaat |
404 |
Q |
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|||| |||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||| || |||| |
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| T |
34704354 |
tgaa--ctatatataactaac-atacacaccatgtttattctcattcaaaaatcctcctgcctcattcaaattccctcctttctatttcgatattccaat |
34704450 |
T |
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| Q |
405 |
gtctagacgcaacctagaaaccatgctctcattccattgcttgactg |
451 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34704451 |
gtctggacgcaacctagaaatcatgctctcattccattgcttgactg |
34704497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 1e-38; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 16965472 - 16965582
Alignment:
| Q |
8 |
tacataaatgcaattccacgtccaaaactcctctttcctttcccattttgattttccaatggctggacacactgttgaactcttgatggcattccactgc |
107 |
Q |
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| T |
16965472 |
tacagaaatgctattactcgtccaaaactcctctttcctttcccatttcaattttccaatggctggacacactgttgaactcttgatgacattccactgc |
16965571 |
T |
|
| Q |
108 |
ttgactggtat |
118 |
Q |
| |
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||||||||||| |
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| T |
16965572 |
ttgactggtat |
16965582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 554 - 673
Target Start/End: Complemental strand, 13066129 - 13066010
Alignment:
| Q |
554 |
gaagctcgcaatctttatgaaggtgtaagggtcaggattggcgcaccatttgctagaagcaaccagagtgtctattttactgtcatacccaactaaactt |
653 |
Q |
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|||||||||||| ||||||||||||||||| | | |||||| |||||| ||||| |||||||| ||| ||||||| |||||||||||||||| || ||| |
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| T |
13066129 |
gaagctcgcaatgtttatgaaggtgtaaggatgaagattggtgcaccagttgctggaagcaactagactgtctatgttactgtcatacccaatgaagctt |
13066030 |
T |
|
| Q |
654 |
gcaatttgttgcatgtggtt |
673 |
Q |
| |
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||||||||| ||||||||| |
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|
| T |
13066029 |
gcaatttgtgtcatgtggtt |
13066010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 16965399 - 16965463
Alignment:
| Q |
267 |
ccacttctccatgctttttctgtttccaacacatctcttattccttcagttatgaattatatata |
331 |
Q |
| |
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|
| T |
16965399 |
ccacttctccatgttgtttctgtttccaacacatcccttatacattcagttatgaactatatata |
16965463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 539 - 616
Target Start/End: Original strand, 16966501 - 16966578
Alignment:
| Q |
539 |
tggaagcggtttgttgaagctcgcaatctttatgaaggtgtaagggtcaggattggcgcaccatttgctagaagcaac |
616 |
Q |
| |
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||||||||||||||||| |||| || || |||||||||| |||||| ||||||||||||||| || || |||||||| |
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|
| T |
16966501 |
tggaagcggtttgttgaggctcacagactctatgaaggtgcaagggttaggattggcgcaccaattactggaagcaac |
16966578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 554 - 673
Target Start/End: Original strand, 48539683 - 48539802
Alignment:
| Q |
554 |
gaagctcgcaatctttatgaaggtgtaagggtcaggattggcgcaccatttgctagaagcaaccagagtgtctattttactgtcatacccaactaaactt |
653 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | | |||||| |||||| ||||| |||||||| ||| ||||||| |||||||||||||||| || ||| |
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| T |
48539683 |
gaagctcgcaatgtttatgaaggtgtaaggatgaagattggtgcaccagttgctggaagcaactagactgtctatgttactgtcatacccaatgaagctt |
48539782 |
T |
|
| Q |
654 |
gcaatttgttgcatgtggtt |
673 |
Q |
| |
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||||||||| ||||||||| |
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| T |
48539783 |
gcaatttgtgtcatgtggtt |
48539802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 331
Target Start/End: Original strand, 38506185 - 38506269
Alignment:
| Q |
247 |
atgcacaataaatcagctatccacttctccatgctttttctgtttccaacacatctcttattccttcagttatgaattatatata |
331 |
Q |
| |
|
||||| ||| ||| ||||| |||||||||||| | ||||||||||||| ||||| ||||| |||||| ||||||| |||||||| |
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|
| T |
38506185 |
atgcagaattaataagctacccacttctccatattgtttctgtttccaatacatcccttataccttcaattatgaactatatata |
38506269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 16036351 - 16036460
Alignment:
| Q |
198 |
gatgcatgtattcatatgtgtgctatttaattcgacctttgccataccc-atgcacaataaatcagctatccacttctccatgctttttctgtttccaac |
296 |
Q |
| |
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|||||||||| |||| || ||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||| | ||||| |||||||| |
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| T |
16036351 |
gatgcatgtactcatttggctgctatttaatcagacctttgccataccccatgcaaaataaattagctatccacttctccatattgtttctatttccaac |
16036450 |
T |
|
| Q |
297 |
acatctctta |
306 |
Q |
| |
|
||||| |||| |
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| T |
16036451 |
acatccctta |
16036460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 12826103 - 12826049
Alignment:
| Q |
64 |
caatggctggacacactgttgaactcttgatggcattccactgcttgactggtat |
118 |
Q |
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||||||||||||||| |||||||||||||||||| |||| |||||||||||| |
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| T |
12826103 |
caatggctggacacagcgttgaactcttgatggcaatccaaaacttgactggtat |
12826049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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