View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5761-Insertion-2 (Length: 860)

Name: NF5761-Insertion-2
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5761-Insertion-2
NF5761-Insertion-2
[»] chr8 (13 HSPs)
chr8 (8-526)||(9050650-9051164)
chr8 (559-860)||(9051161-9051457)
chr8 (522-625)||(32927961-32928064)
chr8 (450-540)||(3278967-3279057)
chr8 (513-583)||(32767447-32767519)
chr8 (550-625)||(32994153-32994230)
chr8 (544-618)||(37159396-37159470)
chr8 (565-607)||(43361292-43361334)
chr8 (532-625)||(10368044-10368137)
chr8 (550-583)||(10552936-10552969)
chr8 (565-626)||(13418736-13418797)
chr8 (522-607)||(35495059-35495144)
chr8 (469-585)||(36447701-36447815)
[»] chr7 (5 HSPs)
chr7 (525-647)||(40491650-40491772)
chr7 (523-596)||(45557435-45557508)
chr7 (522-582)||(40561714-40561774)
chr7 (551-625)||(42481803-42481877)
chr7 (519-584)||(12306789-12306854)
[»] chr6 (4 HSPs)
chr6 (544-625)||(765298-765379)
chr6 (521-625)||(46201-46305)
chr6 (526-626)||(1499973-1500073)
chr6 (529-598)||(25208702-25208771)
[»] chr1 (12 HSPs)
chr1 (372-584)||(18325062-18325275)
chr1 (513-584)||(35961428-35961499)
chr1 (522-643)||(5268288-5268410)
chr1 (544-649)||(43541583-43541688)
chr1 (569-626)||(11817229-11817286)
chr1 (457-561)||(24697575-24697678)
chr1 (521-585)||(34915134-34915198)
chr1 (522-573)||(213246-213297)
chr1 (522-625)||(7524182-7524285)
chr1 (571-626)||(49537187-49537242)
chr1 (571-625)||(47899371-47899425)
chr1 (544-585)||(23628732-23628772)
[»] chr4 (7 HSPs)
chr4 (565-649)||(24364081-24364165)
chr4 (510-584)||(33843768-33843842)
chr4 (528-626)||(43868211-43868309)
chr4 (544-582)||(54487248-54487286)
chr4 (528-625)||(22250301-22250398)
chr4 (571-632)||(34155811-34155872)
chr4 (544-585)||(53914919-53914959)
[»] chr5 (7 HSPs)
chr5 (375-505)||(10859871-10860002)
chr5 (525-617)||(117417-117509)
chr5 (550-618)||(14299423-14299491)
chr5 (544-618)||(29922991-29923065)
chr5 (544-585)||(7178827-7178867)
chr5 (510-647)||(14671082-14671218)
chr5 (513-618)||(35138943-35139048)
[»] chr2 (10 HSPs)
chr2 (513-607)||(15220792-15220886)
chr2 (532-583)||(3853932-3853983)
chr2 (468-583)||(28206692-28206807)
chr2 (550-647)||(11759750-11759847)
chr2 (569-626)||(38129425-38129482)
chr2 (513-596)||(4894099-4894182)
chr2 (410-524)||(6925647-6925761)
chr2 (522-584)||(16518847-16518909)
chr2 (522-596)||(40401585-40401659)
chr2 (545-626)||(43717417-43717498)
[»] chr3 (12 HSPs)
chr3 (522-625)||(30958105-30958209)
chr3 (522-625)||(30973917-30974021)
chr3 (513-625)||(35264324-35264436)
chr3 (550-649)||(24916581-24916680)
chr3 (544-649)||(53567967-53568072)
chr3 (545-647)||(42644298-42644401)
chr3 (565-632)||(42913166-42913233)
chr3 (544-618)||(48089610-48089684)
chr3 (528-601)||(1441344-1441417)
chr3 (568-649)||(27825268-27825349)
chr3 (530-599)||(41591292-41591361)
chr3 (375-435)||(52925731-52925792)
[»] scaffold0361 (1 HSPs)
scaffold0361 (513-607)||(14045-14139)
[»] scaffold0036 (1 HSPs)
scaffold0036 (415-626)||(863-1070)


Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 526
Target Start/End: Original strand, 9050650 - 9051164
Alignment:
Q  8 gcttatgtgtttgaaattgaatcttttgtgtggttgttttgacagtcaagagaaggaagtagtattgcagatgattgggatgatcgtccacacacagttg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9050650 gcttatgtgtttgaaattgaatcttttgtgtggttgttttgacagtcaagagaaggaagtagtattgcagatgattgggatgatcgtccgcacacagttg 9050749  T
Q  108 aagaagttaaggccatgttgcagcagaggaaagaagcagcaatgaagagggaaaagtccttgtcccaagctttttcacaacaggttttagtttcaccctc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9050750 aagaagttaaggccatgttgcagcagaggaaagaagcagcaatgaagagggaaaagtccttgtcccaagcattttcacaacaggttttagtttcaccctc 9050849  T
Q  208 tttttcgctttattttcttgttctaagtctgcatatttggattgatagtgtgtttttcaaaatcactatgtggcgaaatctacattttgaagctttaaca 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||| ||||| |||||||||  || ||  ||||||||||||||       | ||    
T  9050850 tttttcgctttattttcttgttctaagtctgcatatttggattgacggtgagttttccaaaatcac--tgcggaaaaatctacattttg-------agca 9050940  T
Q  308 aaattacaatactacctagattttgtcgaactcgtcgtgattccaaacatttactcatgag-----gtgtgtttccacttttggaggagtaaaattgaat 402  Q
    | ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||     |  |||||||||||||||||||||||||||||||    
T  9050941 acattacaatactacctagattttgtcgaactcatcgtgattccgaacatttactcacgagtgtatgcatgtttccacttttggaggagtaaaattgaat 9051040  T
Q  403 ctagagctatagaattgattttgaattgtttggatcttcttgaggagaattggctctaacttgaaactagaatttggagtttttgcctcaactattgatt 502  Q
    |||||||||||||||| |||||||||| ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||     
T  9051041 ctagagctatagaattcattttgaattttttggatcttctcaaggagaattggttctaacttgaaactagaatttggagtttttgcctcaacaattgata 9051140  T
Q  503 ttttatatcgaatttaatattcaa 526  Q
    |||  ||||||| |||||||||||    
T  9051141 tttggtatcgaacttaatattcaa 9051164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 559 - 860
Target Start/End: Original strand, 9051161 - 9051457
Alignment:
Q  559 tcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatttatatcatcgcataaccaaacacaagcaatttt 658  Q
    |||||||||||||||||||||||||||||   |||||||| |||||||| |||||||||| ||||||||      ||||||||||||||| |||||||||    
T  9051161 tcaatgtacattcaactcacttttagttatttccaattttgcacaatcaattcattcaaaatcaatttac-----cgcataaccaaacacgagcaatttt 9051255  T
Q  659 cttagctaattggctttgacaatgtcacagatttggagaaatggcaggacatcatcaattggaaatgaagatgaacttgaagagagaccaaaatggctag 758  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9051256 cttagctaattggctttgacaaagtcacagatttggagaaatggcaggacatcatcaattggaaatgaagatgaacttgaagagagaccaaaatggctag 9051355  T
Q  759 atagatggatggctacaaaaccgtgggagaatagaggaagggcttcaaccgatcaaagagactctattaagactgtggaagtcgacacatctcaacctta 858  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9051356 atagatggatggctacaaaaccgtgggagaataggggaagggcttcaaccgatcaaagagactctattaagactgtggaagtcgacacatctcaacctta 9051455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 522 - 625
Target Start/End: Original strand, 32927961 - 32928064
Alignment:
Q  522 ttcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtc 621  Q
    ||||||||||||||||||| | ||||| ||||| |||||| | | | ||||||||| ||||||| |||| |||||||||| ||||| |||  ||||| ||    
T  32927961 ttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaattttacataatcaattccctcaaaatc 32928060  T
Q  622 aatt 625  Q
    ||||    
T  32928061 aatt 32928064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 450 - 540
Target Start/End: Original strand, 3278967 - 3279057
Alignment:
Q  450 aattggctctaacttgaaactagaatttggagtttttgcctcaactattgattttttatatcgaatttaatattcaactcacttttacatg 540  Q
    |||||| ||||||||||| |||||||||| || || |||||||||  || | |||| |  || |||||||| |||||||||||||||||||    
T  3278967 aattggttctaacttgaatctagaatttgaagcttctgcctcaacagttaacttttaacctcaaatttaatgttcaactcacttttacatg 3279057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 513 - 583
Target Start/End: Original strand, 32767447 - 32767519
Alignment:
Q  513 aatttaatattcaactcacttttaca--tggaagtatcgaaacataaatcaatgtacattcaactcactttta 583  Q
    |||||| | |||||||||||||||||  || | ||||| |||||||||||||| ||||| |||||||||||||    
T  32767447 aatttattgttcaactcacttttacacatgaatgtatccaaacataaatcaatttacatccaactcactttta 32767519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 550 - 625
Target Start/End: Complemental strand, 32994230 - 32994153
Alignment:
Q  550 aaacataaatcaa--tgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatt 625  Q
    |||||||||||||  | ||| ||||||||||||| ||  |||| |||||||||| ||||| |||||||||| ||||||    
T  32994230 aaacataaatcaaattttaccttcaactcactttcagccagaatcaattttacataatcagttcattcaaaatcaatt 32994153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 544 - 618
Target Start/End: Complemental strand, 37159470 - 37159396
Alignment:
Q  544 gtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaa 618  Q
    ||||| ||||||| || | | |||||||||||| |||||||||| ||  ||||||||||||||| ||| ||||||    
T  37159470 gtatccaaacatatattactttacattcaactcccttttagttaaaattaattttacacaatcaattcgttcaaa 37159396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 565 - 607
Target Start/End: Complemental strand, 43361334 - 43361292
Alignment:
Q  565 tacattcaactcacttttagttagaaccaattttacacaatca 607  Q
    |||||||||||||||||||| ||||||||||| |||| |||||    
T  43361334 tacattcaactcacttttagctagaaccaattatacaaaatca 43361292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 625
Target Start/End: Original strand, 10368044 - 10368137
Alignment:
Q  532 ttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatt 625  Q
    ||||||||| | ||||| ||||| |||||| | ||| ||||||||||||||| | | || |||||||||| || || |||| ||||| ||||||    
T  10368044 ttttacatgaatgtatctaaacacaaatcactttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaaaatcaatt 10368137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 583
Target Start/End: Complemental strand, 10552969 - 10552936
Alignment:
Q  550 aaacataaatcaatgtacattcaactcactttta 583  Q
    |||||||||||||| |||||||||||||||||||    
T  10552969 aaacataaatcaatttacattcaactcactttta 10552936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 626
Target Start/End: Complemental strand, 13418797 - 13418736
Alignment:
Q  565 tacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaattt 626  Q
    ||||||||||||||||||||| |||| ||||| |||  ||||| |||| ||||| |||||||    
T  13418797 tacattcaactcacttttagtcagaatcaattctacctaatcaattcactcaaaatcaattt 13418736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 522 - 607
Target Start/End: Original strand, 35495059 - 35495144
Alignment:
Q  522 ttcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatca 607  Q
    ||||||| ||||||||||| |  |||| ||||| |||||| | || ||||||| |||||||| | |||| |||||||||| |||||    
T  35495059 ttcaacttacttttacatgaatatatccaaacacaaatcactttatattcaacccacttttaatcagaagcaattttacataatca 35495144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 585
Target Start/End: Complemental strand, 36447815 - 36447701
Alignment:
Q  469 ctagaatttggagtttttgcctcaactattgattttttatatcgaatttaatattcaactcacttttacatggaagtatcgaaacataaatcaatgtaca 568  Q
    ||||||||||||| ||||  ||| || ||||| ||||   ||| |||||| ||||||||||| || |||||  | ||||| ||||| |||||| | || |    
T  36447815 ctagaatttggagctttt--ctctacaattgagttttagaatcaaatttattattcaactcagttatacataaatgtatctaaacacaaatcattttata 36447718  T
Q  569 ttcaactcacttttagt 585  Q
    |||||||||||||||||    
T  36447717 ttcaactcacttttagt 36447701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 525 - 647
Target Start/End: Original strand, 40491650 - 40491772
Alignment:
Q  525 aactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaat 624  Q
    |||||||||||||||| | ||||| ||| |||||||| | ||| ||||||||||||||||| | || |||||||||| ||||| |||| ||||| |||||    
T  40491650 aactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaat 40491749  T
Q  625 ttatatcatcgcataaccaaaca 647  Q
    |  | ||| |||| |||||||||    
T  40491750 tcttgtcaccgcagaaccaaaca 40491772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 523 - 596
Target Start/End: Original strand, 45557435 - 45557508
Alignment:
Q  523 tcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaatt 596  Q
    |||||||||||||||||| | ||||| ||||| |||||| | ||| ||||||||||||||||| |||| |||||    
T  45557435 tcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaatt 45557508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 522 - 582
Target Start/End: Complemental strand, 40561774 - 40561714
Alignment:
Q  522 ttcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcactttt 582  Q
    ||||||||||||||||||| | ||||| |||||||||||| | ||| ||||||||| ||||    
T  40561774 ttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttt 40561714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 625
Target Start/End: Complemental strand, 42481877 - 42481803
Alignment:
Q  551 aacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatt 625  Q
    ||||||||||| | ||||||||||||||||||  | |||| |||||||||| ||||| |||| | ||| ||||||    
T  42481877 aacataaatcattttacattcaactcactttttttcagaatcaattttacataatcaattcacttaaaatcaatt 42481803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 584
Target Start/End: Original strand, 12306789 - 12306854
Alignment:
Q  519 atattcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttag 584  Q
    |||||||||||||||||||||| |  || | |||||||||||| | ||  ||||||||||||||||    
T  12306789 atattcaactcacttttacatgaatctagccaaacataaatcactttatcttcaactcacttttag 12306854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 544 - 625
Target Start/End: Complemental strand, 765379 - 765298
Alignment:
Q  544 gtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatt 625  Q
    |||| |||||| |||||| | ||| ||||||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||    
T  765379 gtatggaaacacaaatcactttactttcaacttacttttagttagaatcaattttacacaatcatttcactcaaaatcaatt 765298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 521 - 625
Target Start/End: Complemental strand, 46305 - 46201
Alignment:
Q  521 attcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagt 620  Q
    ||||||||||||||| || | | ||||| ||||| |||| | | ||  | |||||||||||||||||||| |||||||||| ||||| |||| ||||| |    
T  46305 attcaactcacttttccacgaatgtatccaaacacaaataactttaattgcaactcacttttagttagaatcaattttacagaatcaattcactcaaaat 46206  T
Q  621 caatt 625  Q
    |||||    
T  46205 caatt 46201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 626
Target Start/End: Original strand, 1499973 - 1500073
Alignment:
Q  526 actcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatt 625  Q
    ||||||||||||||  | ||||  |||||||||||||| |||| ||||||| |||||||  | || |||||||||| ||||| |||| ||||| ||||||    
T  1499973 actcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaaaatcaatt 1500072  T
Q  626 t 626  Q
    |    
T  1500073 t 1500073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 529 - 598
Target Start/End: Original strand, 25208702 - 25208771
Alignment:
Q  529 cacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaatttt 598  Q
    |||||||||||  |  ||||||||||||||||| | ||||||||||||||||||| ||| || |||||||    
T  25208702 cacttttacataaatctatcgaaacataaatcattttacattcaactcacttttaattaaaatcaatttt 25208771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 9e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 372 - 584
Target Start/End: Complemental strand, 18325275 - 18325062
Alignment:
Q  372 tgtttccacttttggaggagt-aaaattgaatctagagctatagaattgattttgaattgtttggatcttcttgaggagaattggctctaacttgaaact 470  Q
    ||||||||||||||||||||  |||| ||| || |||  |  ||||||||||||||  ||||||||| |||| ||| |||||||  | ||||||||||      
T  18325275 tgtttccacttttggaggagacaaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttaacttgaaatc 18325176  T
Q  471 agaatttggagtttttgcctcaactattgattttttatatcgaatttaatattcaactcacttttacatggaagtatcgaaacataaatcaatgtacatt 570  Q
    |||||| ||||||||||  || || ||||||||||    ||  ||||| |||||||| |||||||||||| | ||||| | |||||||||| | || |||    
T  18325175 agaattaggagtttttgtttctacaattgatttttatcctcagatttattattcaacccacttttacatgaatgtatccatacataaatcactttatatt 18325076  T
Q  571 caactcacttttag 584  Q
    ||| | ||||||||    
T  18325075 caagtgacttttag 18325062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 513 - 584
Target Start/End: Original strand, 35961428 - 35961499
Alignment:
Q  513 aatttaatattcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttag 584  Q
    ||||||| |||||||||||||||||||| | |||| ||||||||||||| | ||| ||||||||||||||||    
T  35961428 aatttaaaattcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcacttttag 35961499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 522 - 643
Target Start/End: Original strand, 5268288 - 5268410
Alignment:
Q  522 ttcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttca-ttcaaagt 620  Q
    ||||||||||||||||||| |  |||  ||||| |||||| | ||||||||||||||||||||  |||| ||||||||||  |||| |||| |||||| |    
T  5268288 ttcaactcacttttacatgaatatattcaaacaaaaatcactttacattcaactcacttttaggcagaatcaattttacaagatcagttcatttcaaaat 5268387  T
Q  621 caatttatatcatcgcataacca 643  Q
    |||||||| |||  |||||||||    
T  5268388 caatttatctcactgcataacca 5268410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 544 - 649
Target Start/End: Complemental strand, 43541688 - 43541583
Alignment:
Q  544 gtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatttatatcatcgcataacca 643  Q
    ||||| |||||||||||| |  |  ||||||||||||||  | ||||| ||||||||| ||||| |||||||| | ||||||| | ||| ||||||||||    
T  43541688 gtatccaaacataaatcacttcattttcaactcacttttgatcagaacgaattttacagaatcaattcattcagaatcaatttttgtcaccgcataacca 43541589  T
Q  644 aacaca 649  Q
    ||||||    
T  43541588 aacaca 43541583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 626
Target Start/End: Complemental strand, 11817286 - 11817229
Alignment:
Q  569 ttcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaattt 626  Q
    |||||||| ||||||||||||| |||||||||| ||||| |||| ||||| |||||||    
T  11817286 ttcaactcgcttttagttagaatcaattttacaaaatcaattcactcaaactcaattt 11817229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 457 - 561
Target Start/End: Complemental strand, 24697678 - 24697575
Alignment:
Q  457 tctaacttgaaactagaatttggagtttttgcctcaactattgattttttatatcgaatttaatattcaactcacttttacatggaagtatcgaaacata 556  Q
    |||||||||||| ||||||||| || |||||||||  | |||||| |||  | || |||||| | ||||||||||||||||||  | ||||| |||||||    
T  24697678 tctaacttgaaattagaatttgaagcttttgcctctgcaattgatatttagtctccaattta-tgttcaactcacttttacataaacgtatccaaacata 24697580  T
Q  557 aatca 561  Q
    |||||    
T  24697579 aatca 24697575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 585
Target Start/End: Original strand, 34915134 - 34915198
Alignment:
Q  521 attcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagt 585  Q
    |||||||||||||||||||| | ||||  |||||||||||| | ||| | |||||||||||||||    
T  34915134 attcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactcacttttagt 34915198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 573
Target Start/End: Complemental strand, 213297 - 213246
Alignment:
Q  522 ttcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaa 573  Q
    ||||||||||||||||||| | ||||| |||||||||||| | |||||||||    
T  213297 ttcaactcacttttacatgcatgtatccaaacataaatcactttacattcaa 213246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 625
Target Start/End: Original strand, 7524182 - 7524285
Alignment:
Q  522 ttcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtc 621  Q
    ||||||||||||||||||  | || || ||||| |||||| | ||| || | ||||||||||||||||| |||||||| | ||||| ||||  |||| ||    
T  7524182 ttcaactcacttttacataaatgtgtccaaacacaaatcactttaccttgagctcacttttagttagaatcaattttatagaatcagttcacccaaaatc 7524281  T
Q  622 aatt 625  Q
    ||||    
T  7524282 aatt 7524285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 626
Target Start/End: Original strand, 49537187 - 49537242
Alignment:
Q  571 caactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaattt 626  Q
    ||||||| |||||| ||||| ||| |||||| ||||| ||||||||||||||||||    
T  49537187 caactcaattttagctagaaacaactttacaaaatcaattcattcaaagtcaattt 49537242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 625
Target Start/End: Original strand, 47899371 - 47899425
Alignment:
Q  571 caactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatt 625  Q
    ||||||||||||||| |||| |||||||||| ||||| |||| ||||| ||||||    
T  47899371 caactcacttttagtaagaatcaattttacaaaatcaattcactcaaaatcaatt 47899425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 585
Target Start/End: Complemental strand, 23628772 - 23628732
Alignment:
Q  544 gtatcgaaacataaatcaatgtacattcaactcacttttagt 585  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  23628772 gtatccaaacataaatcaat-tacattcaactcacttttagt 23628732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 565 - 649
Target Start/End: Complemental strand, 24364165 - 24364081
Alignment:
Q  565 tacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatttatatcatcgcataaccaaacaca 649  Q
    ||||||||| ||||||||||| |||| |||||||||| ||||| |||||||||| ||||||| | |||||  | |||||||||||    
T  24364165 tacattcaaatcacttttagtgagaatcaattttacataatcaattcattcaaaatcaatttttgtcatcataaaaccaaacaca 24364081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 33843768 - 33843842
Alignment:
Q  510 tcgaatttaatattcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttag 584  Q
    ||||||||| | ||||||||||| ||||||| |  |||| |||||||||||| | ||||| ||||||||||||||    
T  33843768 tcgaatttattgttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcacttttag 33843842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 528 - 626
Target Start/End: Original strand, 43868211 - 43868309
Alignment:
Q  528 tcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaattt 626  Q
    ||||||||||||  | ||||| ||| | |||||| | ||| ||||||| |||||||  |||||  ||||||||| ||||| |||||||||| |||||||    
T  43868211 tcacttttacataaatgtatccaaagacaaatcactttactttcaacttacttttaactagaattaattttacaaaatcaattcattcaaaatcaattt 43868309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 544 - 582
Target Start/End: Complemental strand, 54487286 - 54487248
Alignment:
Q  544 gtatcgaaacataaatcaatgtacattcaactcactttt 582  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  54487286 gtatccaaacataaatcaatttacattcaactcactttt 54487248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 625
Target Start/End: Original strand, 22250301 - 22250398
Alignment:
Q  528 tcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatt 625  Q
    ||||||||||||| | ||||| |||  ||||||| |  ||||||||||| |||||||| | || |||||||||| ||||| |||  ||||| ||||||    
T  22250301 tcacttttacatgaatgtatccaaatgtaaatcacttcacattcaactcgcttttagtcataatcaattttacagaatcaattccctcaaaatcaatt 22250398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 632
Target Start/End: Original strand, 34155811 - 34155872
Alignment:
Q  571 caactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatttatatca 632  Q
    |||||||||||||||||||| |||||||||| ||| | |||| |||||  |||||| |||||    
T  34155811 caactcacttttagttagaatcaattttacataattaattcactcaaaaacaatttttatca 34155872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 585
Target Start/End: Original strand, 53914919 - 53914959
Alignment:
Q  544 gtatcgaaacataaatcaatgtacattcaactcacttttagt 585  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  53914919 gtatccaaacataaatcaat-tacattcaactcacttttagt 53914959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 505
Target Start/End: Complemental strand, 10860002 - 10859871
Alignment:
Q  375 ttccacttttggaggagt-aaaattgaatctagagctatagaattgattttgaattgtttggatcttcttgaggagaattggctctaacttgaaactaga 473  Q
    ||||||||||||| |||  |||||| | | ||||| | ||||| |||||||||  |||||| || |||| | | |||||||  ||||||||||| |||||    
T  10860002 ttccacttttggaagaggcaaaattcattatagaggtgtagaaatgattttgacctgtttgaatgttctcgggtagaattgattctaacttgaagctaga 10859903  T
Q  474 atttggagtttttgcctcaactattgattttt 505  Q
    |||||||| ||||||||||||  |||||||||    
T  10859902 atttggagcttttgcctcaacatttgattttt 10859871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 525 - 617
Target Start/End: Complemental strand, 117509 - 117417
Alignment:
Q  525 aactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaa 617  Q
    ||||||||||||||| || ||||| |||||| ||||| | ||| |||||||||||| |||| |||| |||| ||||| ||||| |||| ||||    
T  117509 aactcacttttacatagatgtatccaaacatgaatcattttaccttcaactcacttctagtcagaatcaatattacataatcaattcactcaa 117417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 550 - 618
Target Start/End: Original strand, 14299423 - 14299491
Alignment:
Q  550 aaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaa 618  Q
    ||||| |||||| | ||| |||||||||||||||  ||||| |||||||||||||||| |||| |||||    
T  14299423 aaacacaaatcactttaccttcaactcacttttatctagaatcaattttacacaatcaattcactcaaa 14299491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 544 - 618
Target Start/End: Original strand, 29922991 - 29923065
Alignment:
Q  544 gtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaa 618  Q
    ||||| |||||||||| | |  ||||||||||||||| |||| | || |||||||||| ||||| ||||||||||    
T  29922991 gtatccaaacataaattacttcacattcaactcacttatagtcaaaatcaattttacataatcaattcattcaaa 29923065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 585
Target Start/End: Original strand, 7178827 - 7178867
Alignment:
Q  544 gtatcgaaacataaatcaatgtacattcaactcacttttagt 585  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  7178827 gtatccaaacataaatcaat-tacattcaactcacttttagt 7178867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 647
Target Start/End: Original strand, 14671082 - 14671218
Alignment:
Q  510 tcgaatttaatattcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatt 609  Q
    |||||||||  || ||||||||||||||||| | | ||| |||||||||| | |  |||||||| ||||||||||  | || |||||| ||| ||||| |    
T  14671082 tcgaatttatcatacaactcacttttacatgaatgcatccaaacataaat-acttcacattcaattcacttttagccataatcaatttcacaaaatcaat 14671180  T
Q  610 tcattcaaagtcaatttatatcatcgcataaccaaaca 647  Q
    ||||||||| ||| ||| | |||  ||| |||||||||    
T  14671181 tcattcaaaatcattttttgtcaatgcaaaaccaaaca 14671218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 618
Target Start/End: Complemental strand, 35139048 - 35138943
Alignment:
Q  513 aatttaatattcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttca 612  Q
    |||||| | ||||||||||||| | ||| | |||||  ||||||||||| | ||| ||||||||| ||||||  |||| ||| |||||| ||||| ||||    
T  35139048 aatttattgttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaattttagacagaatcaagtttacataatcaattca 35138949  T
Q  613 ttcaaa 618  Q
     |||||    
T  35138948 ctcaaa 35138943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 607
Target Start/End: Complemental strand, 15220886 - 15220792
Alignment:
Q  513 aatttaatattcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatca 607  Q
    |||||| | ||||||||||||| ||||| | ||||| |||||||||||| | |||||||||||||||||| || | || |||| ||||| |||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcacttttcgtcataatcaatattacaaaatca 15220792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 532 - 583
Target Start/End: Original strand, 3853932 - 3853983
Alignment:
Q  532 ttttacatggaagtatcgaaacataaatcaatgtacattcaactcactttta 583  Q
    ||||||||| | ||||| |||||||||||||| |||||||||||||||||||    
T  3853932 ttttacatgaatgtatccaaacataaatcaatttacattcaactcactttta 3853983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 468 - 583
Target Start/End: Original strand, 28206692 - 28206807
Alignment:
Q  468 actagaatttggagtttttgcctcaactattgattttttatatcgaatttaatattcaactcacttttacatggaagtatcgaaacataaatcaatgtac 567  Q
    |||| ||||| |||| |||||||  || ||||||||||  | || |||||| ||||||||  ||||||||||| | ||| | |||||||||| ||| |||    
T  28206692 actaaaatttagagtctttgcctataccattgatttttagtctcaaatttattattcaacaaacttttacatgaatgtacctaaacataaattaatttac 28206791  T
Q  568 attcaactcactttta 583  Q
    ||||||||||| ||||    
T  28206792 attcaactcacattta 28206807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 647
Target Start/End: Complemental strand, 11759847 - 11759750
Alignment:
Q  550 aaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatttatatcatcgcataaccaaaca 647  Q
    ||||| ||| |||| ||| ||||||||||||||| | | || |||||||||| ||||| |||| ||||| ||||||| | ||| | ||||||||||||    
T  11759847 aaacacaaaccaatttaccttcaactcacttttaatcaaaatcaattttacaaaatcaattcactcaaactcaatttttttcacctcataaccaaaca 11759750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 626
Target Start/End: Complemental strand, 38129482 - 38129425
Alignment:
Q  569 ttcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaattt 626  Q
    |||| ||||||||||||||||| | |||||||| ||||| |||||||||| |||||||    
T  38129482 ttcatctcacttttagttagaatccattttacagaatcaattcattcaaaatcaattt 38129425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 596
Target Start/End: Complemental strand, 4894182 - 4894099
Alignment:
Q  513 aatttaatattcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaatt 596  Q
    |||||| ||||||| ||||||||| ||| | ||||| |||||||||||| | ||| ||||||| | |||||| ||||| |||||    
T  4894182 aatttattattcaagtcacttttaaatgaatgtatctaaacataaatcactttaccttcaacttaattttagctagaatcaatt 4894099  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 410 - 524
Target Start/End: Original strand, 6925647 - 6925761
Alignment:
Q  410 tatagaattgattttgaattgtttggatcttcttgaggagaattggctctaacttgaaactagaatttggagtttttgcctcaactattgattttttata 509  Q
    |||| |||| |||||||  |||||| || |||||||| |||||||  ||| |||||||  |||||||||||| ||||   ||||| |||||||||| | |    
T  6925647 tataaaattaattttgacatgtttgtatattcttgagtagaattgattcttacttgaagttagaatttggagattttagttcaacgattgatttttaaca 6925746  T
Q  510 tcgaatttaatattc 524  Q
    | |||||||| ||||    
T  6925747 tagaatttaacattc 6925761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 522 - 584
Target Start/End: Original strand, 16518847 - 16518909
Alignment:
Q  522 ttcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttag 584  Q
    ||||||||||||||||||| | ||||| ||||| |||||| | |||  |||||||||||||||    
T  16518847 ttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcacttttag 16518909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 522 - 596
Target Start/End: Complemental strand, 40401659 - 40401585
Alignment:
Q  522 ttcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaatt 596  Q
    ||||||| ||||||||||| | ||||| |||||||||| | | ||| ||||||||| |||||||  |||||||||    
T  40401659 ttcaactgacttttacatgaatgtatccaaacataaattagtctaccttcaactcatttttagtaggaaccaatt 40401585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 626
Target Start/End: Original strand, 43717417 - 43717498
Alignment:
Q  545 tatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaattt 626  Q
    |||| |||||||||||| | |||| || ||| || ||||||||||| |||||||||| ||| | |||||||| | |||||||    
T  43717417 tatccaaacataaatcactttacactcgactaacatttagttagaatcaattttacaaaattagttcattcagaatcaattt 43717498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 625
Target Start/End: Original strand, 30958105 - 30958209
Alignment:
Q  522 ttcaactcacttttacatggaagtatcgaaacataaatcaa-tgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagt 620  Q
    ||||| ||||||||||||| |  |||| |||||||||| || | |||||||||||||| |||||  | || |||||||||| ||||| |||||||||| |    
T  30958105 ttcaattcacttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaat 30958204  T
Q  621 caatt 625  Q
    |||||    
T  30958205 caatt 30958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 625
Target Start/End: Original strand, 30973917 - 30974021
Alignment:
Q  522 ttcaactcacttttacatggaagtatcgaaacataaatcaa-tgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagt 620  Q
    ||||| ||||||||||||| |  |||| |||||||||| || | |||||||||||||| |||||  | || |||||||||| ||||| |||||||||| |    
T  30973917 ttcaattcacttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaat 30974016  T
Q  621 caatt 625  Q
    |||||    
T  30974017 caatt 30974021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 513 - 625
Target Start/End: Complemental strand, 35264436 - 35264324
Alignment:
Q  513 aatttaatattcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttca 612  Q
    |||||| | ||||| ||| ||||||||| | ||| | |||||||| ||| | ||| |||||||||||||| |||| || |||||||||| ||||| ||||    
T  35264436 aatttattgttcaagtcatttttacatgaatgtacccaaacataactcactttactttcaactcacttttggttacaatcaattttacagaatcaattca 35264337  T
Q  613 ttcaaagtcaatt 625  Q
     ||||| ||||||    
T  35264336 ctcaaaatcaatt 35264324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 550 - 649
Target Start/End: Original strand, 24916581 - 24916680
Alignment:
Q  550 aaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatttatatcatcgcataaccaaacaca 649  Q
    |||||||||||| | ||||||||||||||||||||   ||| |||||||||| |||||  || |||||| | ||||| | ||| |||| |||||||||||    
T  24916581 aaacataaatcattttacattcaactcacttttagcctgaatcaattttacaaaatcaactcgttcaaaattaatttttgtcaccgcagaaccaaacaca 24916680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 649
Target Start/End: Original strand, 53567967 - 53568072
Alignment:
Q  544 gtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatttatatcatcgcataacca 643  Q
    ||||| |||||||||| | | | ||||||||||||||||| | | || |||||||  | ||||| |||| ||||| |||||||  |||||||||||| ||    
T  53567967 gtatccaaacataaattacttttcattcaactcacttttaatcaaaatcaattttgtaaaatcaattcactcaaaatcaattttcatcatcgcataatca 53568066  T
Q  644 aacaca 649  Q
    ||||||    
T  53568067 aacaca 53568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 647
Target Start/End: Original strand, 42644298 - 42644401
Alignment:
Q  545 tatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaa-ttttacacaatcatttcattcaaagtcaatttatatcatcgcataacca 643  Q
    |||| |||||||||||| | |||||||||||||||||||  || || ||| ||||| | ||||| |||| ||||| ||||||   |||| ||||||||||    
T  42644298 tatccaaacataaatcactttacattcaactcacttttaactaaaatcaatttttataaaatcaattcactcaaaatcaattctcatcaccgcataacca 42644397  T
Q  644 aaca 647  Q
    ||||    
T  42644398 aaca 42644401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 632
Target Start/End: Original strand, 42913166 - 42913233
Alignment:
Q  565 tacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatttatatca 632  Q
    |||||| || ||||||||||||||||  ||||||| ||||||| |||| ||||| ||||||| |||||    
T  42913166 tacatttaattcacttttagttagaattaattttatacaatcaattcactcaaaatcaatttttatca 42913233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 544 - 618
Target Start/End: Complemental strand, 48089684 - 48089610
Alignment:
Q  544 gtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcattcaaa 618  Q
    ||||| || ||||||||| | |||||||||||||||||||  ||||| |||||||| | ||||| || |||||||    
T  48089684 gtatccaatcataaatcattttacattcaactcacttttaactagaatcaattttaaagaatcaatttattcaaa 48089610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 601
Target Start/End: Complemental strand, 1441417 - 1441344
Alignment:
Q  528 tcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttaca 601  Q
    |||||||||| || | ||||| ||||| |||||| | ||| ||||||||||||||||  |||| ||||||||||    
T  1441417 tcacttttacgtgaatgtatctaaacacaaatcactttacgttcaactcacttttagacagaatcaattttaca 1441344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 649
Target Start/End: Complemental strand, 27825349 - 27825268
Alignment:
Q  568 attcaactcacttttagttagaaccaattttacacaatcatttcattcaaagtcaatttatatcatcgcataaccaaacaca 649  Q
    |||||||| ||||||||| | || |||||||| | ||| | |||||||||| ||||||| | | | ||||||||||||||||    
T  27825349 attcaactaacttttagtcataatcaattttataaaataaattcattcaaaatcaatttgtgttaccgcataaccaaacaca 27825268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 599
Target Start/End: Complemental strand, 41591361 - 41591292
Alignment:
Q  530 acttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaatttta 599  Q
    ||||||||||| | ||||| |||||||||||| | || |||||||||| ||||||  |||||| ||||||    
T  41591361 acttttacatgaatgtatccaaacataaatcactttaaattcaactcatttttagcaagaacctatttta 41591292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 52925792 - 52925731
Alignment:
Q  375 ttccacttttggaggagt-aaaattgaatctagagctatagaattgattttgaattgtttgg 435  Q
    |||||||||||||||||| |||||||| ||||||| | || ||||||||||||  |||||||    
T  52925792 ttccacttttggaggagtcaaaattgattctagaggtgtataattgattttgacatgtttgg 52925731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 513 - 607
Target Start/End: Complemental strand, 14139 - 14045
Alignment:
Q  513 aatttaatattcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatca 607  Q
    |||||| | ||||||||||||| ||||| | ||||| |||||||||||| | ||| ||||||||| || |||  |||| |||||||||| |||||    
T  14139 aatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactcaattgtagcaagaatcaattttacaaaatca 14045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 626
Target Start/End: Complemental strand, 1070 - 863
Alignment:
Q  415 aattgattttgaattgtttggatcttcttgaggagaattggctctaacttgaaactagaatttggagtttttgcctcaactattgattttttatatcgaa 514  Q
    |||| |||||||  ||||||||| ||||| || | |||||  ||||||| ||| |||||||||| ||||||| |||| || |||   ||||    || ||    
T  1070 aattaattttgacatgtttggatattcttaagtataattgattctaactagaagctagaatttgaagtttttacctctacaatt---ttttagcctctaa 974  T
Q  515 tttaatattcaactcacttttacatggaagtatcgaaacataaatcaatgtacattcaactcacttttagttagaaccaattttacacaatcatttcatt 614  Q
    |||| | ||||||| ||||||||||| | || || | |||||||||| | || |||||||| | |||||||| ||| |||||||| | ||||| ||||||    
T  973 tttattgttcaacttacttttacatgaatgtttctacacataaatcact-taaattcaacttatttttagttggaatcaattttagagaatcaattcatt 875  T
Q  615 caaagtcaattt 626  Q
     ||| |||||||    
T  874 taaaatcaattt 863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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