View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761-Insertion-5 (Length: 602)
Name: NF5761-Insertion-5
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761-Insertion-5 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 8 - 602
Target Start/End: Original strand, 34754754 - 34755348
Alignment:
| Q |
8 |
gatctcacactcttgagtacattttctcttgactacaggtagtggtgggtgcatgcggaatgcttccttcacgacggctctaatgtaaggaagattctga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34754754 |
gatctcacactcttgagtacattttctcttgactacaggtagtggtgggtgcatgcggaatgcttccttcacgacggctctaatgtaaggaagattctga |
34754853 |
T |
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| Q |
108 |
acatctgattcatcaactagtctatcttttcccacaacagagtcaatctcttctcgagccttcttcaatactctaggattgttgatgagctctgataaag |
207 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34754854 |
acatctgattcatcaactagtccatcttttcccacaacagagtcaatctcttctcgagccttcttcaatactctaggattgttgatgagctctgataaag |
34754953 |
T |
|
| Q |
208 |
tccattcagttgacacagccgtggaatctgtccccgcagagaagaaatcctgcatacacaaagcgttctgaatgtaagagcattgcaagagatgtaaaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34754954 |
tccattcagttgacacagccgtggaatctgtccccgcagagaagaaatcctgcatacacaaagcgttctgaatgtaagagcattgcaagagatgtaaaat |
34755053 |
T |
|
| Q |
308 |
tgcatgtttacttcatagtacatacacataacttaccaaaccatattcaaaagtgccatagtggtataaagttaaaagtcttagttcaataacatctcct |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755054 |
tgcatgtttacttcatagtacatacacataacttaccaaaccatattcaaaagtgccatagtggtataaagttaaaagtcttagttcaataacatctcct |
34755153 |
T |
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| Q |
408 |
caataaatacttaacactattgattgatgaaatttaaattaattagcatataattagaagataagaaacaaagacaattagaataaacttaccacaacaa |
507 |
Q |
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| T |
34755154 |
caataaatacttaacactattgatcgatgaaatttaaattaattagcatataattagaagataagaaacaaagacaattagaataaacttaccacaacaa |
34755253 |
T |
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| Q |
508 |
gacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagcaaagtatcaagaaaaactacactctgctcgccc |
602 |
Q |
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| T |
34755254 |
gacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagcaaagtatcaagaaaaactacactctgctcgccc |
34755348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 34781455 - 34781194
Alignment:
| Q |
8 |
gatctcacactcttgagtacattttctcttgactacaggtagtggtgggtgcatgcggaatgcttccttcacgacggctctaatgtaaggaagattctga |
107 |
Q |
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||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||| |||||||| || |||| |||| |||||||||||||||||||| |
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| T |
34781455 |
gatctcacattcttgtgtacattttcttttgactacaggtagtggtgggtgcaagcgaaatgcttcttttacgatggctttaatgtaaggaagattctga |
34781356 |
T |
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| Q |
108 |
acatctgattcatcaactagtctatcttttcccacaacagagtcaatctcttctcgagccttcttcaatactctaggattgttgatgagctctgataaag |
207 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||| |
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| T |
34781355 |
acatctgattcatcaaccagtctatcttttcccacaacagagtcaatctcctctcgagctttcttcaacactctaggattattgatgagctctgataaag |
34781256 |
T |
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| Q |
208 |
tccattcagttgacacagccgtggaatctgtccccgcagagaagaaatcctgcatacacaaa |
269 |
Q |
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||||||| || ||||| || ||||| ||||| || |||||||| ||||||||||||| |||| |
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| T |
34781255 |
tccattctgtagacacggcggtggagtctgttcctgcagagaaaaaatcctgcatacccaaa |
34781194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 34762739 - 34762992
Alignment:
| Q |
8 |
gatctcacactcttgagtacattttctcttgactacaggtagtggtgggtgcatgcggaatgcttccttcacgacggctctaatgtaaggaagattctga |
107 |
Q |
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|||||||||||||| || ||||||||||| || || |||||||||||||||| |||||| | |||||||| | ||| | |||||| |||||||||||| |
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| T |
34762739 |
gatctcacactcttcggtgcattttctcttcaccacgggtagtggtgggtgcaaacggaatacctccttcaccatggcgcgaatgtatggaagattctga |
34762838 |
T |
|
| Q |
108 |
acatctgattcatcaactagtctatcttttcccacaacagagtcaatctcttctcgagccttcttcaatactctaggattgttgatgagctctgataaag |
207 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||| ||||||||||||||||||| |||| |
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| T |
34762839 |
acatctgattcgtcaactagtctatcttttcccacaacagagtcaatctcttcttgtgctttcttccatactcttggattgttgatgagctctgccaaag |
34762938 |
T |
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| Q |
208 |
tccattcagttgacacagccgtggaatctgtccccgcagagaagaaatcctgca |
261 |
Q |
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||||||| |||| |||||| |||||||||||||| ||||||||||||||||||| |
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| T |
34762939 |
tccattctgttgccacagctgtggaatctgtccctgcagagaagaaatcctgca |
34762992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 413 - 601
Target Start/End: Complemental strand, 34780977 - 34780789
Alignment:
| Q |
413 |
aatacttaacactattgattgatgaaatttaaattaattagcatataattagaagataagaaacaaagacaattagaataaacttaccacaacaagaccc |
512 |
Q |
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|||||||||||| |||||| ||| |||||||||||||||| || || ||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
34780977 |
aatacttaacaccgttgattaatggaatttaaattaattagaatgtatttataagataagaaacaaagacaatcagaagaaacttaccacaacaagaccc |
34780878 |
T |
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| Q |
513 |
ttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagcaaagtatcaagaaaaactacactctgctcgcc |
601 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||| || ||| ||||||||||||| ||||||||||| ||| |||||||||| |
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| T |
34780877 |
ttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaacattctgctcgcc |
34780789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 492 - 601
Target Start/End: Original strand, 34763214 - 34763323
Alignment:
| Q |
492 |
aaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagcaaagtatcaagaaaaactacac |
591 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||| ||||||||||||| ||||||||||| ||| |
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| T |
34763214 |
aaactcaccacaacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaacat |
34763313 |
T |
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| Q |
592 |
tctgctcgcc |
601 |
Q |
| |
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|||||||||| |
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| T |
34763314 |
tctgctcgcc |
34763323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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