View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761-Insertion-6 (Length: 201)
Name: NF5761-Insertion-6
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761-Insertion-6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 2077175 - 2076981
Alignment:
| Q |
7 |
aagcagagccgccaccgcattccatttcatcaaatcaaacacggtcaacgtccaatcaaaactccgtcaaatcacccaaacctctgttatcaaagccttc |
106 |
Q |
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| T |
2077175 |
aagcagagccgccaccgcattccatttcatcaaatcaaacaccgtcaacgtccaatcaaaactccgtcaaatcacccaaacctctgttatcaaagccttc |
2077076 |
T |
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| Q |
107 |
atcatcgatctcttctgtacttccgccatggaaacagcttcctccatgctaataccagtttactatttcttcacatccggtgctgctgtactttc |
201 |
Q |
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| T |
2077075 |
atcatcgatctcttctgtacttccgccatggaaacagcttcctccatgctaataccagtttactatttcttcacatccggtgctgctgtactttc |
2076981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 2074062 - 2073875
Alignment:
| Q |
14 |
gccgccaccgcattccatttcatcaaatcaaacacggtcaacgtccaatcaaaactccgtcaaatcacccaaacctctgttatcaaagccttcatcatcg |
113 |
Q |
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| T |
2074062 |
gccgccaccgcatttcagttcatcaaatcaaacgccgtcaacatagaaaccaaactccgtcaaatcatccaaacctctgttatcaaagccttcatcatcg |
2073963 |
T |
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| Q |
114 |
atctcttctgtacttccgccatggaaacagcttcctccatgctaataccagtttactatttcttcacatccggtgctgctgtactttc |
201 |
Q |
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| T |
2073962 |
acctcttttgtacctccgccatggaaacagcttccgccatgcaaatccctgtttactatttcttcacatccggtgctgctgtactttc |
2073875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 2069802 - 2069667
Alignment:
| Q |
60 |
aatcaaaactccgtcaaatcacccaaacctctgttatcaaagccttcatcatcgatctcttctgtacttccgccatggaaacagcttcctccatgctaat |
159 |
Q |
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|||| ||||||||| | || || |||||||| ||||||||| ||||||| |||||| | || || ||||| ||||||||| |||||| ||||| ||| |
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| T |
2069802 |
aatccaaactccgtgagattactcaaacctccgttatcaaatccttcattatcgatatgttttgcacttctgccatggaagttgcttccaccatgggaat |
2069703 |
T |
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| Q |
160 |
accagtttactatttcttcacatccggtgctgctgt |
195 |
Q |
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| T |
2069702 |
ccctgtttactatttcttcacttctggagctgctgt |
2069667 |
T |
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