View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_high_18 (Length: 411)
Name: NF5761_high_18
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 31599478 - 31599823
Alignment:
| Q |
11 |
caaaggaaggaaagtgtgagtatgagaatgtcttagatgataacagtatttaagattttcacaagaggggtctcatgattcctgtacatagcatttaaaa |
110 |
Q |
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| T |
31599478 |
caaaggaaggaaagtgtgagtatgagaatgtcttagatgataacagtatttaagattttcacaagaggggtctcatgattcctgtacatagcatttaaaa |
31599577 |
T |
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| Q |
111 |
cctcgactaccaaagcataaagctgggacataacatttaaaaccctaattctccctccattcccaccnnnnnnnnnnnnnccacttattacaatgttttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31599578 |
cctcgactaccaaagcataaagctgggacataacatttaaaaccctaattctccctccattcccacctttttgtttttttccacttattacaatgttttt |
31599677 |
T |
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| Q |
211 |
ctttaacgttcacttattacaatacaatgcccttttaagtgtaaaaatttaatgttactacnnnnnnngtcccataagtataagtatatataactgtcat |
310 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31599678 |
ctttaacgttcacttattacaatgcgatgcccttttaagtgtaaaaatttaatgttactactttttttgtcccataagtataagtatatataactgtcat |
31599777 |
T |
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| Q |
311 |
attt--acacacaaaaattgttgatatttagttatactatccaata |
354 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31599778 |
atttacacacacaaaaattgttgatatttagttatactatccaata |
31599823 |
T |
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