View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5761_high_19 (Length: 396)
Name: NF5761_high_19
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_high_19 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 30171664 - 30172046
Alignment:
| Q |
16 |
caatagttgctgcagcagagccaaattttgggagggaggtgataagggtaaatgatgccattgttgaatttttatttagatttcttaaattctctcttgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30171664 |
caatagttgctgcagcagagccaaattttgggagggaggtgataagggtaaatgatgccattgttgaattcttatttagatttcttaaattctctcttgg |
30171763 |
T |
|
| Q |
116 |
gaaatttgtatatgattatattgcattgttcatcactttgtatgtaaagtgtttatatagagatcctccacggtttgtttgcgtgccaagagtaattcac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30171764 |
gaaatttgtatatgattatattgcattgtttatcactttgtatgtaaagtgtttatatagagatcctccacggtttgtttgcgtgccaagagtaattcac |
30171863 |
T |
|
| Q |
216 |
gctcactagtggtagaaaaaagagagatatataatagtgtcaatgcactcatttaggacccagaattataggattagttaatttagttgtttgttaagga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30171864 |
gctcactagtggtagaaaaaagagagatatataatagtgtcaatgcactcatttaggacccagaattataggattagttaatttagttgtttgttaagga |
30171963 |
T |
|
| Q |
316 |
aatatataccacatgtaaataagctacctc--nnnnnnnnnnaggaaaaatgaagttaaaaatcaactagtggtcaatatatt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30171964 |
catatataccacatgtaaataagctacctcttctttttttttaggaaaaatgaagttaaaaatcaactagtggtcaatatatt |
30172046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University