View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_high_21 (Length: 390)
Name: NF5761_high_21
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 379
Target Start/End: Complemental strand, 7179608 - 7179246
Alignment:
| Q |
17 |
attttgagttgtcagaatgattttgaaaatgttaaatttgaagggagaaaatgaagataatatatattttggatgattcaaatgattttatcatgaatca |
116 |
Q |
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| T |
7179608 |
attttgagttgtcagaatgattttgaaaatgataaatttgaagggagaaaatgaagataatatatattttggatgattcaaatgatcttatcatgaatca |
7179509 |
T |
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| Q |
117 |
taaaataagaaataggatagtttttattttattttataatgtttctaaagtatgggatccacattattttatccaacaaaaacgtgagtgttgaggtgta |
216 |
Q |
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| T |
7179508 |
taaaataagaaataggatagtttttattttattttataatatttctaaagtatgggatccacattatttcatccaacaaaagagtgagtgttgaggtgta |
7179409 |
T |
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| Q |
217 |
ttaaaaatagagtgttgctagcacctctcatgctaacatgtagaaaaggttgaatcatagtattgactgaaagaaagctagattgtgatgtagaaatgtt |
316 |
Q |
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| T |
7179408 |
ttaaaaatagagtgttgctagcacctctcatgctaatatgtagaaaaggttgaatcatagtattgagtgaaagaaagctagactgtgatttagaaatgtt |
7179309 |
T |
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| Q |
317 |
atggggaatcattcaatatattcgtgaaggatctcattcttcccttgaactatagagctgatg |
379 |
Q |
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| T |
7179308 |
atggggaaccattcaatatattcgtgaaggatctcattcttcccttgaactatagagctgatg |
7179246 |
T |
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