View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5761_high_22 (Length: 385)

Name: NF5761_high_22
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5761_high_22
NF5761_high_22
[»] chr4 (6 HSPs)
chr4 (18-234)||(16898130-16898346)
chr4 (18-234)||(18346647-18346863)
chr4 (18-234)||(53097907-53098123)
chr4 (269-383)||(16898379-16898493)
chr4 (269-383)||(18346894-18347008)
chr4 (18-103)||(29443440-29443525)
[»] chr3 (4 HSPs)
chr3 (18-234)||(13237628-13237844)
chr3 (18-234)||(13749079-13749294)
chr3 (269-383)||(13237483-13237597)
chr3 (297-383)||(13749353-13749439)
[»] scaffold0002 (4 HSPs)
scaffold0002 (18-234)||(199120-199334)
scaffold0002 (18-234)||(281689-281903)
scaffold0002 (277-383)||(198996-199102)
scaffold0002 (277-383)||(281921-282027)
[»] scaffold0315 (2 HSPs)
scaffold0315 (111-234)||(10137-10260)
scaffold0315 (269-350)||(10025-10106)
[»] chr5 (1 HSPs)
chr5 (18-106)||(37377194-37377282)
[»] scaffold0082 (1 HSPs)
scaffold0082 (18-103)||(43876-43961)
[»] chr8 (1 HSPs)
chr8 (18-88)||(42931832-42931902)
[»] chr6 (2 HSPs)
chr6 (269-333)||(21893257-21893321)
chr6 (200-234)||(21893192-21893226)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 16898130 - 16898346
Alignment:
18 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccgtgcctaagggcata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16898130 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccgtgcctaagggcata 16898229  T
118 tcggttgaagtagattattctttttgatcaatcaaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctggatgtagattatgata 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16898230 tcggttgaagtagattcttctttttgatcaatcaaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctggatgtagattatgata 16898329  T
218 tctatacagctggatct 234  Q
    |||||||||||||||||    
16898330 tctatacagctggatct 16898346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 18346647 - 18346863
Alignment:
18 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccgtgcctaagggcata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18346647 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccgtgcctaagggcata 18346746  T
118 tcggttgaagtagattattctttttgatcaatcaaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctggatgtagattatgata 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18346747 tcggttgaagtagattcttctttttgatcaatcaaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctggatgtagattatgata 18346846  T
218 tctatacagctggatct 234  Q
    |||||||||||||||||    
18346847 tctatacagctggatct 18346863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 53097907 - 53098123
Alignment:
18 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccgtgcctaagggcata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
53097907 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccacccttttcaagtgttatttttatgttatgtatggccgtgcctaagggcata 53098006  T
118 tcggttgaagtagattattctttttgatcaatcaaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctggatgtagattatgata 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
53098007 tcggttgaagtagattcttctttttgatcaatcaaaaccccttcccaaactgtacaagcttcttccaaagcatacgattttctggatgtagattatgata 53098106  T
218 tctatacagctggatct 234  Q
    |||||||||||||||||    
53098107 tctatacagctggatct 53098123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 269 - 383
Target Start/End: Original strand, 16898379 - 16898493
Alignment:
269 gacataacgaagtaccacatcagtgggtatatcatataggaatctaaatctgccaaatcagtcatgttatgatattctacatcctaggtctttctgttcc 368  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16898379 gacataacgaagtaccacatgagtgggtatataatataggaatctaaatctgccaaatcagtcatgttatgatattctacatcctaggtctttctgttcc 16898478  T
369 ttcatctggcctatg 383  Q
    |||||||||| ||||    
16898479 ttcatctggcttatg 16898493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 269 - 383
Target Start/End: Original strand, 18346894 - 18347008
Alignment:
269 gacataacgaagtaccacatcagtgggtatatcatataggaatctaaatctgccaaatcagtcatgttatgatattctacatcctaggtctttctgttcc 368  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18346894 gacataacgaagtaccacatgagtgggtatataatataggaatctaaatctgccaaatcagtcatgttatgatattctacatcctaggtctttctgttcc 18346993  T
369 ttcatctggcctatg 383  Q
    |||||||||| ||||    
18346994 ttcatctggcttatg 18347008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 29443525 - 29443440
Alignment:
18 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29443525 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccg 29443440  T

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Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 13237844 - 13237628
Alignment:
18 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccgtgcctaagggcata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13237844 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccgtgcctaagggcata 13237745  T
118 tcggttgaagtagattattctttttgatcaatcaaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctggatgtagattatgata 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13237744 tcggttgaagtagattcttctttttgatcaatcaaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctggatgtagattatgata 13237645  T
218 tctatacagctggatct 234  Q
    |||||||||||||||||    
13237644 tctatacagctggatct 13237628  T

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Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 13749079 - 13749294
Alignment:
18 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccgtgcctaagggcata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
13749079 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgaccaccctttccaagtgttatttc-atgttatgtatggtcgtgcctaaggacata 13749177  T
118 tcggttgaagtagattattctttttgatcaatcaaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctggatgtagattatgata 217  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||    
13749178 tcggttgaagtaaattcttctttttgatcaatcaaaacaccttcccaaactgtacaagcttcttccaaagcatacaactttctggatgtagaatatgata 13749277  T
218 tctatacagctggatct 234  Q
    ||||||||| |||||||    
13749278 tctatacagttggatct 13749294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 269 - 383
Target Start/End: Complemental strand, 13237597 - 13237483
Alignment:
269 gacataacgaagtaccacatcagtgggtatatcatataggaatctaaatctgccaaatcagtcatgttatgatattctacatcctaggtctttctgttcc 368  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13237597 gacataacgaagtaccacatgagtgggtatataatataggaatctaaatctgccaaatcagtcatgttatgatattctacatcctaggtctttctgttcc 13237498  T
369 ttcatctggcctatg 383  Q
    |||||||||| ||||    
13237497 ttcatctggcttatg 13237483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 13749353 - 13749439
Alignment:
297 atatcatataggaatctaaatctgccaaatcagtcatgttatgatattctacatcctaggtctttctgttccttcatctggcctatg 383  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
13749353 atataatataggaatctaaatctgccaaatcagtcatgttatgatattctacatcctaggtctttctgttccttcatctggcttatg 13749439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 199334 - 199120
Alignment:
18 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccgtgcctaagggcata 117  Q
    ||||||||| ||||||||||||||||| || |||||||||||||| |||||| ||||| |||| |||||||||||||| |||||||||||||||||||||    
199334 ttttgcaatgagtttcgctacagcacctgctgctctagctaattgcccaccccttccacgtgtgatttctatgttatgcatggccgtgcctaagggcata 199235  T
118 tcggttgaagtagattattctttttgatcaatcaaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctggatgtagattatgata 217  Q
    |||||||||||||||| |||||||   ||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | |||     
199234 tcggttgaagtagattcttcttttctctcaa--aaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctagatgtatatgacgatc 199137  T
218 tctatacagctggatct 234  Q
    |||| |||| |||||||    
199136 tctagacagatggatct 199120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 281689 - 281903
Alignment:
18 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccgtgcctaagggcata 117  Q
    ||||||||| ||||||||||||||||| || |||||||||||||| |||||| ||||| |||| |||||||||||||| |||||||||||||||||||||    
281689 ttttgcaatgagtttcgctacagcacctgctgctctagctaattgcccaccccttccacgtgtgatttctatgttatgcatggccgtgcctaagggcata 281788  T
118 tcggttgaagtagattattctttttgatcaatcaaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctggatgtagattatgata 217  Q
    |||||||||||||||| |||||||   ||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | |||     
281789 tcggttgaagtagattcttcttttctctcaa--aaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctagatgtatatgacgatc 281886  T
218 tctatacagctggatct 234  Q
    |||| |||| |||||||    
281887 tctagacagatggatct 281903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 383
Target Start/End: Complemental strand, 199102 - 198996
Alignment:
277 gaagtaccacatcagtgggtatatcatataggaatctaaatctgccaaatcagtcatgttatgatattctacatcctaggtctttctgttccttcatctg 376  Q
    |||||||||||| ||||| |||||   | ||||||| ||||||||| ||||  |||||||||||| ||||||||||||||||| |  ||||| |||||||    
199102 gaagtaccacatgagtggatatataggaaaggaatccaaatctgccgaatcgctcatgttatgatcttctacatcctaggtctctgcgttccgtcatctg 199003  T
377 gcctatg 383  Q
    || ||||    
199002 gcttatg 198996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 281921 - 282027
Alignment:
277 gaagtaccacatcagtgggtatatcatataggaatctaaatctgccaaatcagtcatgttatgatattctacatcctaggtctttctgttccttcatctg 376  Q
    |||||||||||| ||||| |||||   | ||||||| ||||||||| ||||  |||||||||||| ||||||||||||||||| |  ||||| |||||||    
281921 gaagtaccacatgagtggatatataggaaaggaatccaaatctgccgaatcgctcatgttatgatcttctacatcctaggtctctgcgttccgtcatctg 282020  T
377 gcctatg 383  Q
    || ||||    
282021 gcttatg 282027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 10260 - 10137
Alignment:
111 gggcatatcggttgaagtagattattctttttgatcaatcaaaaccccttcccaaactgtacaagcttcttccaaagcatacggctttctggatgtagat 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
10260 gggcatatcggttgaagtagattcttctttttgatcaatcaaaaccccttcccaaactgtacatgcttcttccaaagcatacggctttctggatgtagat 10161  T
211 tatgatatctatacagctggatct 234  Q
    ||||||||||||||||||||||||    
10160 tatgatatctatacagctggatct 10137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 10106 - 10025
Alignment:
269 gacataacgaagtaccacatcagtgggtatatcatataggaatctaaatctgccaaatcagtcatgttatgatattctacat 350  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
10106 gacataacgaagtaccacatgagtgggtatattatataggaatctaaatctgccaaatcagtcatgttatgatattctacat 10025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 37377282 - 37377194
Alignment:
18 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccgtgc 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37377282 ttttgcaatcaatttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccgtgc 37377194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0082 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 43961 - 43876
Alignment:
18 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttctatgttatgtatggccg 103  Q
    ||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
43961 ttttgcaatcagtttcgctacagcacctgctgctctagctaattttccaccctttccaagtgttatttctatgttatgtatggccg 43876  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 42931832 - 42931902
Alignment:
18 ttttgcaatcagtttcgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttcta 88  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42931832 ttttgcaatcagttttgctacagcaccagccgctctagctaattgtccaccctttccaagtgttatttcta 42931902  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 21893257 - 21893321
Alignment:
269 gacataacgaagtaccacatcagtgggtatatcatataggaatctaaatctgccaaatcagtcat 333  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||    
21893257 gacataacgaagtaccacattattgggtatataatataggaatctaaatctgccaaatcagtcat 21893321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 21893192 - 21893226
Alignment:
200 tggatgtagattatgatatctatacagctggatct 234  Q
    |||||||||||||| ||||||||||||||||||||    
21893192 tggatgtagattattatatctatacagctggatct 21893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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