View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_high_23 (Length: 349)
Name: NF5761_high_23
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 16992071 - 16992363
Alignment:
| Q |
18 |
cacattcatcagagagatttttcaatttcccttctacactctttggtttcagtgtctctgatacaccattcggtttaaaagaagaactacccttcttctc |
117 |
Q |
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| T |
16992071 |
cacattcatcagagagatttttcactttcccttccacactctttcgtttcagtgtctctggtactccattcagcttagaagaagaactacccttcttctc |
16992170 |
T |
|
| Q |
118 |
aatggtacaggaggaaacactagcatgatctgcttgctccaactcatcaatatttgtggaagatggattactctcattctctacctcctcacatttcctc |
217 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16992171 |
aatggtacaggaggaaacactagcatggtcggcttgctccaactcatcaatatttgtggaagatggattgctctcattctctacctcctcacatttcctc |
16992270 |
T |
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| Q |
218 |
tcagaaattccacnnnnnnnatccttcccctctctcaccatcacctcatcatcaatatcataagatgaactatgctcaacattcacctcctca |
310 |
Q |
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| T |
16992271 |
tcagaaattctactttttttatccttcccctctctcaccatctcctcatcatcattatcagaagatgaactattctcaacatttacttcctca |
16992363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 16968429 - 16968637
Alignment:
| Q |
22 |
ttcatcagagagatttttcaatttcccttctacactctttggtttcagtgtctctgatacaccattcggtttaaaagaagaactacccttcttctcaatg |
121 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||||||||||||||||||| |
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| T |
16968429 |
ttcatcagagagatttttcgctttcccttctacactctttggtttcagtgtctctgatactccattcagcttagaagaagaactacccttcttctcaatg |
16968528 |
T |
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| Q |
122 |
gtacaggaggaaacactagcatgatctgcttgctccaactcatcaatatttgtggaagatggattactctcattctctacctcctcacatttcctctcag |
221 |
Q |
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| T |
16968529 |
gtacaggaggaaacactagcatgatcttcatgctccaactcatcaatatttgtggaagatggactattctcaacattcacctcttcatcattcctctcag |
16968628 |
T |
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| Q |
222 |
aaattccac |
230 |
Q |
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||||||||| |
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| T |
16968629 |
aaattccac |
16968637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 17007925 - 17007992
Alignment:
| Q |
128 |
gaggaaacactagcatgatctgcttgctccaactcatcaatatttgtggaagatggattactctcatt |
195 |
Q |
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| T |
17007925 |
gaggaaacactagcatgatctgcatgttccaactcatcagtacttgtggaagatggactattctcatt |
17007992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 53 - 300
Target Start/End: Complemental strand, 35263308 - 35263064
Alignment:
| Q |
53 |
acactctttggtttcagtgtctctgatacaccattcggtttaaaagaagaactacccttcttctcaatggtacaggaggaaacactagcatgatctgctt |
152 |
Q |
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|||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
35263308 |
acactcattggtttcagtgtctctgatactccattcagtttagaagaagaactacccttcttctcaatgatacaggaggaaacactagcatgatctgcat |
35263209 |
T |
|
| Q |
153 |
gctccaactcatcaatatttgtggaagatggattactctcattctctacctcctcacatttcctctcagaaattccacnnnnnnnatccttcccctctct |
252 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||| | ||||||||| | |||| ||||||| |
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| T |
35263208 |
gctccaactcatcaatatttgtggaagatggaacattctcattctctaccttctcgtatttcctcttaaaaattccactttttttacgcttcacctctct |
35263109 |
T |
|
| Q |
253 |
caccatcacctcatcatcaatatcataagatgaactatgctcaacatt |
300 |
Q |
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|||||| || |||||| |||||||||||| ||||| ||||||||| |
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| T |
35263108 |
caccat---ttcttcatcattatcataagatggactattctcaacatt |
35263064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 212 - 315
Target Start/End: Complemental strand, 35263050 - 35262947
Alignment:
| Q |
212 |
ttcctctcagaaattccacnnnnnnnatccttcccctctctcaccatcacctcatcatcaatatcataagatgaactatgctcaacattcacctcctcaa |
311 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||| || ||||||||| || |||||| |
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| T |
35263050 |
ttcctctcagaaattccactctttttatccttcccctctctcaccatctcctcatcatcattatcagaagatgaacaattctcaacatttacttcctcat |
35262951 |
T |
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| Q |
312 |
catt |
315 |
Q |
| |
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|||| |
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| T |
35262950 |
catt |
35262947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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