View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_high_28 (Length: 303)
Name: NF5761_high_28
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 110 - 271
Target Start/End: Original strand, 36526195 - 36526354
Alignment:
| Q |
110 |
catgtaattactatgactaaagcaagaggaaatatcaaactaacgacatccaaaaaataacctgtattgttagattctaggatcaatcaaatctttacgt |
209 |
Q |
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| T |
36526195 |
catgtaattactatgactaaagcaagaggaaataccaaactaacgacatccaaaaaataacctgtattgttagattctaggatcaatcaaatctttacgt |
36526294 |
T |
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| Q |
210 |
tgccacagtgttgctaccatttgaagctcataactcaactgcaaaggatcagcatgtctaag |
271 |
Q |
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| T |
36526295 |
tgccaca--gttgctaccatttgaagctcataactcaactgcaaaggatcagcatgtctaag |
36526354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 36526100 - 36526154
Alignment:
| Q |
15 |
caaaggaaagcaattcttaccaacaataccatacttgcagcaatgctattcctgt |
69 |
Q |
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| T |
36526100 |
caaaggaaagcaattcttaccaacaataccatacttgcagcaatgctattcctgt |
36526154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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