View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5761_high_37 (Length: 250)

Name: NF5761_high_37
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5761_high_37
NF5761_high_37
[»] chr3 (6 HSPs)
chr3 (1-232)||(49406454-49406687)
chr3 (167-232)||(48886120-48886185)
chr3 (168-223)||(51305176-51305231)
chr3 (165-232)||(31169563-31169630)
chr3 (170-223)||(36177884-36177937)
chr3 (168-220)||(37182466-37182518)
[»] chr1 (2 HSPs)
chr1 (8-163)||(52269848-52270005)
chr1 (168-232)||(45364193-45364257)
[»] chr7 (4 HSPs)
chr7 (164-232)||(12117065-12117133)
chr7 (170-232)||(38970761-38970823)
chr7 (163-223)||(45548787-45548847)
chr7 (166-220)||(30720747-30720801)
[»] chr4 (7 HSPs)
chr4 (168-232)||(53346987-53347051)
chr4 (164-223)||(13093567-13093626)
chr4 (166-232)||(33524095-33524161)
chr4 (166-223)||(19273529-19273586)
chr4 (166-223)||(35810007-35810064)
chr4 (165-225)||(17329205-17329265)
chr4 (166-229)||(16021463-16021526)
[»] chr5 (3 HSPs)
chr5 (169-232)||(4938800-4938863)
chr5 (168-223)||(39239161-39239216)
chr5 (165-219)||(13478988-13479042)
[»] chr8 (4 HSPs)
chr8 (164-232)||(30528939-30529007)
chr8 (165-223)||(40284221-40284279)
chr8 (166-223)||(26245244-26245301)
chr8 (168-232)||(44503984-44504048)
[»] chr2 (3 HSPs)
chr2 (168-232)||(5144663-5144727)
chr2 (165-232)||(7762478-7762545)
chr2 (171-232)||(13150908-13150969)
[»] chr6 (2 HSPs)
chr6 (166-223)||(26653554-26653611)
chr6 (166-223)||(26759522-26759579)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 49406454 - 49406687
Alignment:
Q  1 tgtgatgaaaaattcttgcaatttccttcatgttctgtattgtgggatctaatcttttagggaagaaaggaggcaaggtttcaatacgagcaaagcaaaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49406454 tgtgatgaaaaattcttgcaatttccttcatgttctatattgtgggatctaatcttttagggaagaaaggaggcagggtttcaatacgagcaaagcaaaa 49406553  T
Q  101 tatgcaagtgttggctagacttttgattttcctttctttttcttatttcatcatcaatggtgtcat--aagaccatttacaatggcctattgaatgccat 198  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  49406554 tatgcaagtgttggctagacttttgatttccctttctttttcttatttcatcatcaatggtgtcataaaagaccatttacaatggcctattgaatgccat 49406653  T
Q  199 tttcaacatattgaaaccattggagtggggtatt 232  Q
    ||||||||||||||||||||||||| ||||||||    
T  49406654 tttcaacatattgaaaccattggagcggggtatt 49406687  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 48886120 - 48886185
Alignment:
Q  167 aagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    |||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||| ||| ||||    
T  48886120 aagaccatctacaatggcttattgaatgccattttcaacctattgaaatcattggagagggttatt 48886185  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 51305231 - 51305176
Alignment:
Q  168 agaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggag 223  Q
    ||||||||||||||||| | ||||||||||| |||||||| |||| ||||||||||    
T  51305231 agaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggag 51305176  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 31169563 - 31169630
Alignment:
Q  165 ataagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    |||||||||| ||||||||| | ||||||||||||||||| |  |||||| |||||||| ||| ||||    
T  31169563 ataagaccatctacaatggcttgttgaatgccattttcaataggttgaaatcattggagagggttatt 31169630  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 36177884 - 36177937
Alignment:
Q  170 accatttacaatggcctattgaatgccattttcaacatattgaaaccattggag 223  Q
    ||||||||||||||| | ||||||||||| |||||||| |||| || |||||||    
T  36177884 accatttacaatggcttgttgaatgccatattcaacatgttgagactattggag 36177937  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 37182466 - 37182518
Alignment:
Q  168 agaccatttacaatggcctattgaatgccattttcaacatattgaaaccattg 220  Q
    |||||| |||||||||| | ||||||||||| |||||||| |||| |||||||    
T  37182466 agaccacttacaatggcttgttgaatgccatattcaacatgttgagaccattg 37182518  T

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Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 52270005 - 52269848
Alignment:
Q  8 aaaaattcttgcaatttccttcatgttctgtattgtgggatctaatcttttagggaagaaaggaggcaaggtttcaatacgagcaaagcaaaatatgcaa 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  52270005 aaaaattcttgcaatttccttcatgttttgtattgtgggatctaaccttttagggaagaaaggagacaaggtttcaatacgagcaaagcaaaatatgcag 52269906  T
Q  108 gtgttggctagacttttgattttcctttc--tttttcttatttcatcatcaatggtgt 163  Q
    |||||||||||||||||||||| ||||||  ||||| | |||||||||| || |||||    
T  52269905 gtgttggctagacttttgatttccctttccttttttttgatttcatcattaacggtgt 52269848  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 45364257 - 45364193
Alignment:
Q  168 agaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    ||||||||||||||||| | ||||||| ||||||||| || |||||| ||||||||  |||||||    
T  45364257 agaccatttacaatggcttgttgaatgtcattttcaatatgttgaaatcattggagaagggtatt 45364193  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 12117133 - 12117065
Alignment:
Q  164 cataagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  12117133 cataagaccatttacaatggcctattgaaggccattttcaacatattgaaaccattgtagtggggtatt 12117065  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 38970823 - 38970761
Alignment:
Q  170 accatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38970823 accatttacaatggcctattgaatgccattttcaacatattgaaactattggagtggggtatt 38970761  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 45548787 - 45548847
Alignment:
Q  163 tcataagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggag 223  Q
    |||||||||||||||||||||| | |||||| |||| |||||||| |||| || |||||||    
T  45548787 tcataagaccatttacaatggcttgttgaataccatattcaacatgttgagactattggag 45548847  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 30720801 - 30720747
Alignment:
Q  166 taagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattg 220  Q
    |||||||| |||||||||| | ||||||||||| |||||||| |||| |||||||    
T  30720801 taagaccacttacaatggcttgttgaatgccatattcaacatgttgagaccattg 30720747  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 53346987 - 53347051
Alignment:
Q  168 agaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  53346987 agaccatttacaatggcctattgaatgccattttcaatatattgaaaccattggagaggggtatt 53347051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 13093567 - 13093626
Alignment:
Q  164 cataagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggag 223  Q
    ||||||||||||||||||||| | ||||||||||| |||||||| |||| ||||||||||    
T  13093567 cataagaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggag 13093626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 33524161 - 33524095
Alignment:
Q  166 taagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    ||||||||| ||||||||| |||||||||||||||||||| |||||||| |||| ||| ||| ||||    
T  33524161 taagaccatctacaatggcttattgaatgccattttcaacctattgaaatcatttgagagggttatt 33524095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 19273586 - 19273529
Alignment:
Q  166 taagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggag 223  Q
    ||||||||||||||||||| | ||||||||||| |||||||| |||| ||||||||||    
T  19273586 taagaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggag 19273529  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 35810064 - 35810007
Alignment:
Q  166 taagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggag 223  Q
    ||||||||||||||||||| | ||||||||||| |||||||| |||| ||||||||||    
T  35810064 taagaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggag 35810007  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 17329205 - 17329265
Alignment:
Q  165 ataagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtg 225  Q
    |||||||||| |||||||||||||||||    ||||||||||| |||||||||||||||||    
T  17329205 ataagaccatctacaatggcctattgaaaatgattttcaacatgttgaaaccattggagtg 17329265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 16021526 - 16021463
Alignment:
Q  166 taagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggt 229  Q
    |||||||| |||||||||| | ||||||||||| |||||||| |||| ||||||| || |||||    
T  16021526 taagaccacttacaatggcttgttgaatgccatattcaacatgttgagaccattgtaggggggt 16021463  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 4938863 - 4938800
Alignment:
Q  169 gaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  4938863 gaccatttacaatggcctattgaatgtcattttgaacatattgaaaccattgtagtggggtatt 4938800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 39239216 - 39239161
Alignment:
Q  168 agaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggag 223  Q
    ||||||||||||||||| | ||||||||||| |||||||| |||| ||||||||||    
T  39239216 agaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggag 39239161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 13478988 - 13479042
Alignment:
Q  165 ataagaccatttacaatggcctattgaatgccattttcaacatattgaaaccatt 219  Q
    |||||||||||||||||||| | ||||||| ||| |||||||| |||| ||||||    
T  13478988 ataagaccatttacaatggcttgttgaatgtcatattcaacatgttgagaccatt 13479042  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 30528939 - 30529007
Alignment:
Q  164 cataagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    ||||||||||||||||||||| |||||||||  |||||||| |||||||||||||||||| ||||||||    
T  30528939 cataagaccatttacaatggcatattgaatgttattttcaatatattgaaaccattggagaggggtatt 30529007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 40284279 - 40284221
Alignment:
Q  165 ataagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggag 223  Q
    |||||||||||||||||||| | ||||||||||| |||||||| |||| ||||||||||    
T  40284279 ataagaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggag 40284221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 26245301 - 26245244
Alignment:
Q  166 taagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggag 223  Q
    ||||||||||||||||||| | ||||||||||| |||||||| |||| ||||||||||    
T  26245301 taagaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggag 26245244  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 44504048 - 44503984
Alignment:
Q  168 agaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    ||||||| ||||||||| |||||||||||||||||| ||  |||||| |||||||| ||| ||||    
T  44504048 agaccatctacaatggcttattgaatgccattttcatcaggttgaaatcattggagagggttatt 44503984  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 5144663 - 5144727
Alignment:
Q  168 agaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| ||| ||||    
T  5144663 agaccatttacaatggcctattgaatgccattttcaatatattgaaacgattagagagggatatt 5144727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 7762478 - 7762545
Alignment:
Q  165 ataagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    |||||||||||||||||||| | ||||||||||||||||| || |||||| ||||||||  |||||||    
T  7762478 ataagaccatttacaatggcttgttgaatgccattttcaatatgttgaaatcattggagaagggtatt 7762545  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 13150908 - 13150969
Alignment:
Q  171 ccatttacaatggcctattgaatgccattttcaacatattgaaaccattggagtggggtatt 232  Q
    |||| |||||||| |||||||||||||||||||| ||||||||| ||||  |||||||||||    
T  13150908 ccatatacaatggtctattgaatgccattttcaatatattgaaatcattatagtggggtatt 13150969  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 26653554 - 26653611
Alignment:
Q  166 taagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggag 223  Q
    ||||||||||||||||||| | ||||||||||| |||||||| |||| ||||||||||    
T  26653554 taagaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggag 26653611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 26759522 - 26759579
Alignment:
Q  166 taagaccatttacaatggcctattgaatgccattttcaacatattgaaaccattggag 223  Q
    ||||||||||||||||||| | ||||||||||| |||||||| |||| ||||||||||    
T  26759522 taagaccatttacaatggcttgttgaatgccatattcaacatgttgagaccattggag 26759579  T

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