View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_high_50 (Length: 221)
Name: NF5761_high_50
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 16992586 - 16992387
Alignment:
| Q |
16 |
atgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgatgactgttcttcaagctcctcttatgttaatgatga |
115 |
Q |
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| T |
16992586 |
atgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgatgactgttcttcaagctcctcttatgttaatgatga |
16992487 |
T |
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| Q |
116 |
tgatgatgc---------------cgaggaggagaaagagagttataggaaagatttcaatgtggtggaggaattggtaagaaaggtgaagagtaaaaaa |
200 |
Q |
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| T |
16992486 |
tgatgatgctgaggacgaggaagaggaggaggagaaagagggttataggaaagatttcaatgtggtggaggagttggtaagaaaggtgaagagtcaaaaa |
16992387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 17008185 - 17008126
Alignment:
| Q |
17 |
tgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatga |
76 |
Q |
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| T |
17008185 |
tgattctagtgatgaagattttaaagttgaggagctgaatgagatttctgacaatgatga |
17008126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 10601676 - 10601747
Alignment:
| Q |
9 |
gaagaatatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgat |
80 |
Q |
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| T |
10601676 |
gaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatgacgat |
10601747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 35262707 - 35262832
Alignment:
| Q |
9 |
gaagaatatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgatgactgttcttcaagctcctcttatgtta |
108 |
Q |
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| T |
35262707 |
gaagaaaatgactctagtgatgaagattttgcagttgatgaactgaatgaaatttcagacaatcatgatgatgacagttcttctagctcctcttatgttg |
35262806 |
T |
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| Q |
109 |
atgatgatgatgatgccgaggaggag |
134 |
Q |
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| T |
35262807 |
atgatgatgatgacgaggaggaggag |
35262832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 35262863 - 35262928
Alignment:
| Q |
135 |
aaagagagttataggaaagatttcaatgtggtggaggaattggtaagaaaggtgaagagtaaaaaa |
200 |
Q |
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| T |
35262863 |
aaagagggttacagaaaagacttcaatgtggtggaggaattagtaagaaaggtgaagagtcaaaaa |
35262928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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