View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_high_7 (Length: 524)
Name: NF5761_high_7
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_high_7 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 507
Target Start/End: Original strand, 2408804 - 2409313
Alignment:
| Q |
12 |
tatactacagtaggaacacttcaatgcactctatttaacaagaaattaacctaattatttcaaccatattcaaaattcaagtaaataactctaaacaacg |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2408804 |
tataatacagtaggaacacttcaatgcactctatttaacaagaaattaacctaattatttcaaccatattcaaaattcaagtaaataactctaaacaacg |
2408903 |
T |
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| Q |
112 |
atgaagattaagaataacttagaaaacgataataagttgcatttcaatgaaaacaagtaatatatctaataatcatgaacaaatctttacctcaacaatg |
211 |
Q |
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| T |
2408904 |
atgaagattaagaataacttagaaaacgataataagttgcatttcaatgaaaacaagtaatatatctaataattatgaacaaatctttacctcaacattg |
2409003 |
T |
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| Q |
212 |
ataacaagatgcgtagaactctccttgatgaagaatcacgatttgagtaactttggtttgggaatatagggctaccacaagtgatgtatcataac----- |
306 |
Q |
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| T |
2409004 |
ataacaagatgtgtagaactctccttgatgaagaatcacgatttgagcaactttgatttgggaatatagggttaccacaagtgatgtatcataacccggt |
2409103 |
T |
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| Q |
307 |
-------tcc---tttttaatatccggaccgatccatggcccatatcacggatttgggtcgggttttccgaaccagttcacaaaatattatgttgcggtt |
396 |
Q |
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| T |
2409104 |
tttcaaatccgagtctttaatatccggtccgagctatggcccatatcacagatttgggtcgggttttctgacccagttcacaaaatattatgttgcggtt |
2409203 |
T |
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| Q |
397 |
nnnnnnnnnnnnntctgggaaagtgagaaatctacaataaccaacgaatactagaaagtttgaaagtgagaatgagtgcaagtaatttggtagcagatca |
496 |
Q |
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| T |
2409204 |
-aaaaaaaaaaaatctgggaaagtgagaaatctacaatcaccaacgaatactagaaagtttcgaagtgagaatgagtgcaagtaatttggtagcagatca |
2409302 |
T |
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| Q |
497 |
agtgtggaagc |
507 |
Q |
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| T |
2409303 |
agtgtggaagc |
2409313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 411 - 507
Target Start/End: Original strand, 11546 - 11644
Alignment:
| Q |
411 |
ctgggaaagtgagaaatctacaa-ta-accaacgaatactagaaagtttgaaagtgagaatgagtgcaagtaatttggtagcagatcaagtgtggaagc |
507 |
Q |
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| T |
11546 |
ctgggaaagtgagaaatctaaaaatacaccaacgaatactagaaagtttcaaagtgagaatgagtgcaagtaatttggtaacagatgaagtgtggaagc |
11644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 507
Target Start/End: Complemental strand, 39962156 - 39962101
Alignment:
| Q |
452 |
aagtttgaaagtgagaatgagtgcaagtaatttggtagcagatcaagtgtggaagc |
507 |
Q |
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| T |
39962156 |
aagtttcaaagtgagcatgagtgcaagtaatttggcaacagatggagtgtggaagc |
39962101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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