View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_low_10 (Length: 482)
Name: NF5761_low_10
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 469
Target Start/End: Original strand, 38406941 - 38407396
Alignment:
| Q |
14 |
gaagagaaaaggtaggccgtataaatgaaatttattaagaatctactaaacggta--ttcatgcattggttttgctgttataatagcctactgtgttgct |
111 |
Q |
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| T |
38406941 |
gaagagaaaaggtaggccgtataaatgaaatttattaagaatctactaaacggtacattcatgcattggttttgctgttatcatagcttactgtgctgct |
38407040 |
T |
|
| Q |
112 |
tgtagaaactttattgcagannnnnnnnacaggagatttcgttgcagctgtattgcacggtttgtgatagtttttgtggctagagagtatatatagtttg |
211 |
Q |
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| T |
38407041 |
tgtagaaactttattgcagatttttat-acaggagatttcgttgcaactgtattgcacggtttgtgatagtttttgtggctagagagtatatatagtttg |
38407139 |
T |
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| Q |
212 |
tgctgtgtaggcttggtaacacagaattttgccattttgcattgttcgagtgcagtttgcgttatcatcctatgcttgaaattgttgttctgcattttga |
311 |
Q |
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| T |
38407140 |
tgctgtgtaggcttggtaacacagaattttgccattttgcattgttcgagtgcagtttgcgttatcatcctatgcttgaaattgttgttctgcattttga |
38407239 |
T |
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| Q |
312 |
gctccaattggcctcattgaagtctcaagggtgacttaggcaacaagaggtctggttgataacaagatcaaataataaactataccaatggaatcaacaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38407240 |
gctccaattggcctcattgaagtctcaagggtgacttaggcaacaagaggtctggttgataacaagatcaaataataaactataccaatgg-atcaacaa |
38407338 |
T |
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| Q |
412 |
tgttgaggaaaagctggaaatatgaggtttgtgtgattcgcatatttttgaaaatatt |
469 |
Q |
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| T |
38407339 |
tgttgaggaaaagcttgaaatatgaggtttgtgtgattcgcatatttttgaaaatatt |
38407396 |
T |
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