View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5761_low_11 (Length: 477)

Name: NF5761_low_11
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5761_low_11
NF5761_low_11
[»] chr5 (4 HSPs)
chr5 (29-161)||(472960-473092)
chr5 (121-161)||(9142047-9142087)
chr5 (86-154)||(12201384-12201452)
chr5 (106-162)||(17766562-17766618)
[»] chr1 (4 HSPs)
chr1 (30-161)||(36272464-36272595)
chr1 (30-162)||(6768035-6768167)
chr1 (30-148)||(41882998-41883115)
chr1 (120-166)||(47334907-47334953)
[»] chr7 (6 HSPs)
chr7 (18-148)||(44541612-44541743)
chr7 (121-162)||(27600103-27600144)
chr7 (121-161)||(27599211-27599251)
chr7 (106-148)||(24995865-24995907)
chr7 (106-148)||(24996676-24996718)
chr7 (120-162)||(46759269-46759311)
[»] chr2 (5 HSPs)
chr2 (30-161)||(23462405-23462536)
chr2 (73-148)||(44094777-44094852)
chr2 (121-161)||(5851393-5851433)
chr2 (113-161)||(14573999-14574047)
chr2 (125-161)||(37546576-37546612)
[»] chr6 (4 HSPs)
chr6 (30-81)||(8383236-8383287)
chr6 (30-133)||(23593857-23593960)
chr6 (47-161)||(24125972-24126086)
chr6 (125-161)||(24126730-24126766)
[»] chr4 (11 HSPs)
chr4 (47-161)||(47377532-47377646)
chr4 (86-154)||(31911441-31911509)
chr4 (106-161)||(25371538-25371593)
chr4 (121-155)||(45330571-45330605)
chr4 (121-162)||(45331461-45331502)
chr4 (121-161)||(25970811-25970851)
chr4 (121-161)||(30808621-30808661)
chr4 (121-161)||(30809513-30809553)
chr4 (86-154)||(32450191-32450259)
chr4 (121-161)||(36865725-36865765)
chr4 (125-161)||(47376852-47376888)
[»] scaffold0129 (1 HSPs)
scaffold0129 (69-154)||(43174-43259)
[»] scaffold2003 (1 HSPs)
scaffold2003 (112-148)||(530-566)
[»] chr8 (2 HSPs)
chr8 (69-117)||(510497-510545)
chr8 (121-161)||(43924490-43924530)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 472960 - 473092
Alignment:
Q  29 agttgaagacaaagttgagaaagatatagtgtgtgtagcttataataagatcagtggtcctctttaatttgatggctaaaaaatacttttttatggtggg 128  Q
    |||||||||||||||||  |||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  472960 agttgaagacaaagttggaaaagatatagtgtgtgcagattataataagatcagtggtcctctttaatctgatggctaaaaaatacttttctatggtggg 473059  T
Q  129 aaacaactcccctttcccatattaaatgtcacc 161  Q
    |||| ||| ||||||||||||||||||| ||||    
T  473060 aaacgacttccctttcccatattaaatgccacc 473092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 9142087 - 9142047
Alignment:
Q  121 atggtgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    |||||||||||||||| |||||||||||| |||||| ||||    
T  9142087 atggtgggaaacaacttccctttcccatactaaatgccacc 9142047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 12201452 - 12201384
Alignment:
Q  86 tcctctttaatttgatggctaaaaaatacttttttatggtgggaaacaactcccctttcccatattaaa 154  Q
    ||||||||||||| |||  | ||||| ||||| | ||||| ||||||||||| ||||||||||| ||||    
T  12201452 tcctctttaatttaatgattcaaaaaaactttctcatggtaggaaacaactctcctttcccatactaaa 12201384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 17766618 - 17766562
Alignment:
Q  106 aaaaaatacttttttatggtgggaaacaactcccctttcccatattaaatgtcaccc 162  Q
    |||||| ||||| | ||||||||||||||||  ||||||||||| ||||| ||||||    
T  17766618 aaaaaaaactttctcatggtgggaaacaactatcctttcccatactaaatctcaccc 17766562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 9e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 36272464 - 36272595
Alignment:
Q  30 gttgaagacaaagttgagaaagatatagtgtgtgtagcttataataagatcagtggtcctctttaatttgatggctaaaaaatacttttttatggtggga 129  Q
    |||||||||||||||||||||||||||||||||| ||  |||||||||||||||  |||||||||||  |||||| ||||||||||||   |||||||||    
T  36272464 gttgaagacaaagttgagaaagatatagtgtgtgcagactataataagatcagtaatcctctttaatcagatggccaaaaaatactttcccatggtggga 36272563  T
Q  130 aacaactcccctttcccatattaaatgtcacc 161  Q
    ||||| | ||| |||||||  |||||| ||||    
T  36272564 aacaagttcccattcccatgctaaatgccacc 36272595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 6768035 - 6768167
Alignment:
Q  30 gttgaagacaaagttgagaaagatatagtgtgtgtagcttataataagatcagtggtcctctttaatttgatggctaaaaaatacttttttatggtggga 129  Q
    ||||||||||||||||||||||||||| |||||| ||  ||||||||||| |||  |||||||||||  |||||| ||||||||||||   |||||||||    
T  6768035 gttgaagacaaagttgagaaagatataatgtgtgcagactataataagattagtaatcctctttaatcagatggccaaaaaatactttcccatggtggga 6768134  T
Q  130 aacaactcccctttcccatattaaatgtcaccc 162  Q
    || || | ||| |||||||  |||||| |||||    
T  6768135 aataagttcccattcccatgctaaatgccaccc 6768167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 41883115 - 41882998
Alignment:
Q  30 gttgaagacaaagttgagaaagatatagtgtgtgtagcttataataagatcagtggtcctctttaatttgatggctaaaaaatacttttttatggtggga 129  Q
    |||||||||||||| |||||||||||||||||  |||  |||||||| || | || | ||||||||| | ||| |||||||  |||||||  ||||||||    
T  41883115 gttgaagacaaagt-gagaaagatatagtgtggatagactataataaaataaatgtttctctttaatctaatgactaaaaataactttttcttggtggga 41883017  T
Q  130 aacaactcccctttcccat 148  Q
    ||||||   ||||||||||    
T  41883016 aacaaccttcctttcccat 41882998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 47334907 - 47334953
Alignment:
Q  120 tatggtgggaaacaactcccctttcccatattaaatgtcacccgaaa 166  Q
    |||||||||||||||||||| ||||||||| |||||| |||| ||||    
T  47334907 tatggtgggaaacaactcccttttcccatactaaatgccaccggaaa 47334953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 44541612 - 44541743
Alignment:
Q  18 aaatgattgtgag-ttgaagacaaagttgagaaagatatagtgtgtgtagcttataataagatcagtggtcctctttaatttgatggctaaaaaatactt 116  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||| |   |||||||||||  ||| | ||||||||| ||||||| |||||||||||    
T  44541612 aaatgattgtgaggttgaagacaaagttgggaaagatatagtgtgtgcatactataataagattggtgattctctttaatctgatggccaaaaaatactt 44541711  T
Q  117 ttttatggtgggaaacaactcccctttcccat 148  Q
    |   ||||| |||||||| ||| |||||||||    
T  44541712 tcccatggtcggaaacaattccactttcccat 44541743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 27600103 - 27600144
Alignment:
Q  121 atggtgggaaacaactcccctttcccatattaaatgtcaccc 162  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  27600103 atggtgggaaacaactcccctttcccattttaaatgccaccc 27600144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 27599251 - 27599211
Alignment:
Q  121 atggtgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  27599251 atggtgggaaacaactcccctttcccattttaaatgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 24995907 - 24995865
Alignment:
Q  106 aaaaaatacttttttatggtgggaaacaactcccctttcccat 148  Q
    ||||||||||||   ||||||||||||||||||||||||||||    
T  24995907 aaaaaatactttcccatggtgggaaacaactcccctttcccat 24995865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 24996676 - 24996718
Alignment:
Q  106 aaaaaatacttttttatggtgggaaacaactcccctttcccat 148  Q
    ||||||||||||   ||||||||||||||||||||||||||||    
T  24996676 aaaaaatactttcccatggtgggaaacaactcccctttcccat 24996718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 46759269 - 46759311
Alignment:
Q  120 tatggtgggaaacaactcccctttcccatattaaatgtcaccc 162  Q
    |||| ||||||||||||||||||||||||| |||||| |||||    
T  46759269 tatgatgggaaacaactcccctttcccatactaaatgccaccc 46759311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 23462536 - 23462405
Alignment:
Q  30 gttgaagacaaagttgagaaagatatagtgtgtgtagcttataataagatcagtggtcctctttaatttgatggctaaaaaatacttttttatggtggga 129  Q
    |||||||||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||| |  |||||| ||||||||||||   ||||| | |    
T  23462536 gttgaagacaaagttgagaaagatatagtgtgtgcagactataataagatcagtgatcctctttagtcagatggccaaaaaatactttcccatggtagaa 23462437  T
Q  130 aacaactcccctttcccatattaaatgtcacc 161  Q
    ||||| | ||| || ||||  |||||||||||    
T  23462436 aacaagttcccatttccatgctaaatgtcacc 23462405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 44094777 - 44094852
Alignment:
Q  73 ataagatcagtggtcctctttaatttgatggctaaaaaatacttttttatggtgggaaacaactcccctttcccat 148  Q
    |||| ||||||| ||||||||||||| ||||  |||||| ||||||||||||||||||||||||  ||||||||||    
T  44094777 ataaaatcagtgctcctctttaatttaatggtcaaaaaaaacttttttatggtgggaaacaactttcctttcccat 44094852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 5851393 - 5851433
Alignment:
Q  121 atggtgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    |||||||||||||||||| | |||||| |||||||||||||    
T  5851393 atggtgggaaacaactcctcattcccagattaaatgtcacc 5851433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 14573999 - 14574047
Alignment:
Q  113 acttttttatggtgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    ||||| ||||||||||||| ||||| ||||||||| |||||||| ||||    
T  14573999 actttcttatggtgggaaagaactctcctttcccaaattaaatggcacc 14574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 37546576 - 37546612
Alignment:
Q  125 tgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  37546576 tgggaaacaactcccctttcccattttaaatgccacc 37546612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 8383287 - 8383236
Alignment:
Q  30 gttgaagacaaagttgagaaagatatagtgtgtgtagcttataataagatca 81  Q
    ||||| |||||||| | |||||||||||||||||||| ||||||||||||||    
T  8383287 gttgatgacaaagtggggaaagatatagtgtgtgtagattataataagatca 8383236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 23593857 - 23593960
Alignment:
Q  30 gttgaagacaaagttgagaaagatatagtgtgtgtagcttataataagatcagtggtcctctttaatttgatggctaaaaaatacttttttatggtggga 129  Q
    |||||||||||||||| |||||||||||||| || |   |||||||| ||||||| ||||||||| | | |  || ||||||||||||   |||||||||    
T  23593857 gttgaagacaaagttgggaaagatatagtgtatgcatactataataaaatcagtgatcctctttagtctaaccgccaaaaaatactttcccatggtggga 23593956  T
Q  130 aaca 133  Q
    ||||    
T  23593957 aaca 23593960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 24126086 - 24125972
Alignment:
Q  47 gaaagatatagtgtgtgtagcttataataagatcagtggtcctctttaatttgatggctaaaaaatacttttttatggtgggaaacaactcccctttccc 146  Q
    |||| ||||||||||  |||  |||||||| || | || ||||||| ||| | |||||| ||||  |||||   ||||||||||||||||||||||||||    
T  24126086 gaaaaatatagtgtggatagactataataaaattaatgttcctcttaaatctaatggctgaaaataactttcccatggtgggaaacaactcccctttccc 24125987  T
Q  147 atattaaatgtcacc 161  Q
    | |||||||| ||||    
T  24125986 aaattaaatgccacc 24125972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 24126730 - 24126766
Alignment:
Q  125 tgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  24126730 tgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 47377532 - 47377646
Alignment:
Q  47 gaaagatatagtgtgtgtagcttataataagatcagtggtcctctttaatttgatggctaaaaaatacttttttatggtgggaaacaactcccctttccc 146  Q
    |||| ||||||||||  |||  |||||||| || | || ||||||| ||| | |||||| ||||  |||||   ||||||||||||||||||||||||||    
T  47377532 gaaaaatatagtgtggatagactataataaaattaatgttcctcttaaatctaatggctgaaaataactttcccatggtgggaaacaactcccctttccc 47377631  T
Q  147 atattaaatgtcacc 161  Q
    | |||||||| ||||    
T  47377632 aaattaaatggcacc 47377646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 31911441 - 31911509
Alignment:
Q  86 tcctctttaatttgatggctaaaaaatacttttttatggtgggaaacaactcccctttcccatattaaa 154  Q
    ||||| ||||| ||||||  |||||||||||||  |||||||||||||| |  ||||||||||||||||    
T  31911441 tcctccttaatctgatggtcaaaaaatacttttccatggtgggaaacaaatatcctttcccatattaaa 31911509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 25371538 - 25371593
Alignment:
Q  106 aaaaaatacttttttatggtgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    |||||||||||| | ||||||||||| || || ||||||||| |||||||||||||    
T  25371538 aaaaaatactttctcatggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 45330605 - 45330571
Alignment:
Q  121 atggtgggaaacaactcccctttcccatattaaat 155  Q
    |||||||||||||||||||||||||||| ||||||    
T  45330605 atggtgggaaacaactcccctttcccattttaaat 45330571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 45331461 - 45331502
Alignment:
Q  121 atggtgggaaacaactcccctttcccatattaaatgtcaccc 162  Q
    |||||||||||||||||||||||| ||| ||||||| |||||    
T  45331461 atggtgggaaacaactcccctttctcattttaaatgccaccc 45331502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 25970811 - 25970851
Alignment:
Q  121 atggtgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    ||||||||||||||||||| ||||||||| |||||| ||||    
T  25970811 atggtgggaaacaactcccttttcccatactaaatgccacc 25970851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 30808661 - 30808621
Alignment:
Q  121 atggtgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    ||||||||||||||||| |||||||||| ||||||| ||||    
T  30808661 atggtgggaaacaactctcctttcccattttaaatgccacc 30808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 30809513 - 30809553
Alignment:
Q  121 atggtgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    ||||||| |||||||||||||||||||| ||||||| ||||    
T  30809513 atggtggaaaacaactcccctttcccattttaaatgccacc 30809553  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 32450191 - 32450259
Alignment:
Q  86 tcctctttaatttgatggctaaaaaatacttttttatggtgggaaacaactcccctttcccatattaaa 154  Q
    ||||| ||||| ||||||  |||||||||||||  |||||||||||||| |  | ||||||||||||||    
T  32450191 tcctccttaatctgatggtcaaaaaatacttttccatggtgggaaacaagtatcatttcccatattaaa 32450259  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 36865725 - 36865765
Alignment:
Q  121 atggtgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    ||||||||||| ||||| ||||||||| |||||||||||||    
T  36865725 atggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 47376888 - 47376852
Alignment:
Q  125 tgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  47376888 tgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 43174 - 43259
Alignment:
Q  69 tataataagatcagtggtcctctttaatttgatggctaaaaaatacttttttatggtgggaaacaactcccctttcccatattaaa 154  Q
    |||||||| |||| || ||||||||||||| |||| ||| |  ||||||   ||| ||||||||||||||||||| ||||| ||||    
T  43174 tataataaaatcaatgttcctctttaatttaatggttaagatttactttcccatgatgggaaacaactccccttttccatactaaa 43259  T

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Target: scaffold2003 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 530 - 566
Alignment:
Q  112 tacttttttatggtgggaaacaactcccctttcccat 148  Q
    |||||||  ||||||||||||||||||||||||||||    
T  530 tacttttccatggtgggaaacaactcccctttcccat 566  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 510545 - 510497
Alignment:
Q  69 tataataagatcagtggtcctctttaatttgatggctaaaaaatacttt 117  Q
    |||||||||||||||| |||| |||||||| |||| |||||| ||||||    
T  510545 tataataagatcagtgttcctatttaatttaatggttaaaaactacttt 510497  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 43924530 - 43924490
Alignment:
Q  121 atggtgggaaacaactcccctttcccatattaaatgtcacc 161  Q
    |||||||||||||||| |||||||||| |||||||| ||||    
T  43924530 atggtgggaaacaacttccctttcccaaattaaatgccacc 43924490  T

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