View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_low_13 (Length: 460)
Name: NF5761_low_13
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 76 - 453
Target Start/End: Original strand, 44737973 - 44738349
Alignment:
| Q |
76 |
gaatttattaatgtgtttccggtctagaactcaagttcacaacaatgatgacggatctccgaaagagatttcttgaaacggtgcttttagttcggattct |
175 |
Q |
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| T |
44737973 |
gaatttattaatgtgttttcggtctagaactcaagttcacaacaatgatgacggatctccgaaagagatttcttgaaacggtgcttttagttcggattct |
44738072 |
T |
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| Q |
176 |
acattggagacgattctctatgaagtgtatcagcaaacactttgacaatgactttgtgtcagaatctacaattgtttgtttatattttatgattcttttt |
275 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44738073 |
acattgaagacgattctctatgaagtgtattagcaaacactttgacaatgactttgtgtcagaatctacaattatttgtttatattttatgattcttttt |
44738172 |
T |
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| Q |
276 |
atatttaaaggaaaatgctaatatatgtgttttaaggaaataaaatagtgaatcaaatatagaaaatttgagtgatgagaattgtacattcaacttcnnn |
375 |
Q |
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| T |
44738173 |
atatttaaaggaaaatgctaatatatgtgttttaaggaaataaaata-tgaatcaaatatagaaaatttgagtgatgagaattgtacattcaacttcttt |
44738271 |
T |
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| Q |
376 |
nnnnagtttagatttgttaaaaacattgatactacttttggaggaggcaaattttattatagaaatgcagaataatct |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44738272 |
ttttagtttagatttgttaaaaacattgatactacttttggaggaggcaaattttattatagaaatgcagaattatct |
44738349 |
T |
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