View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5761_low_14 (Length: 456)

Name: NF5761_low_14
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5761_low_14
NF5761_low_14
[»] chr1 (3 HSPs)
chr1 (18-438)||(26406026-26406449)
chr1 (252-303)||(45022934-45022985)
chr1 (261-301)||(16844660-16844700)
[»] scaffold0475 (1 HSPs)
scaffold0475 (252-303)||(1522-1573)
[»] chr7 (7 HSPs)
chr7 (252-303)||(8185910-8185961)
chr7 (252-303)||(14294772-14294823)
chr7 (368-429)||(8185748-8185809)
chr7 (368-429)||(14294924-14294985)
chr7 (368-408)||(10854022-10854062)
chr7 (271-303)||(10855298-10855330)
chr7 (261-301)||(26141792-26141832)
[»] chr5 (2 HSPs)
chr5 (334-408)||(20172899-20172973)
chr5 (261-301)||(34139011-34139051)
[»] chr8 (2 HSPs)
chr8 (366-402)||(30638566-30638602)
chr8 (261-301)||(24439308-24439348)
[»] scaffold0126 (1 HSPs)
scaffold0126 (252-301)||(10082-10131)
[»] scaffold0039 (1 HSPs)
scaffold0039 (368-429)||(2391-2452)
[»] scaffold0048 (1 HSPs)
scaffold0048 (261-301)||(15047-15087)
[»] chr6 (2 HSPs)
chr6 (261-301)||(22943881-22943921)
chr6 (261-301)||(23866325-23866365)
[»] chr3 (2 HSPs)
chr3 (261-301)||(5892800-5892840)
chr3 (261-301)||(18501392-18501432)


Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 26406449 - 26406026
Alignment:
Q  18 aaattcttgtaatagcagcatctatttgatcggtcttggcttgtagtcagatttattcaattaatggctgcatg----gtcagtataaataatacttttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    |||||||||||||||| |||||    
T  26406449 aaattcttgtaatagcagcatctatttgatcggtcttggcttggagtcaggtttattcaattaatggctgcatgcatggtcagtataaataataattttt 26406350  T
Q  114 gtacctatcaaataagacctaaatttttctaatgtgaatactatggctaacaattctttttctgtggtagtgtaattaatttgtgtctcatttaagactt 213  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26406349 gtacctgtcaaataagacctaaatttttctaatgtgaatactatggctaacaattctttttctgtggtagtgtaattaatttgtatctcatttaagactt 26406250  T
Q  214 tgctagcttagtgaattccatgatttannnnnnnnccttttctttgtcctagtactgcaccgacagcataatcactagcatcacacattatcggtgaaat 313  Q
    ||||||||||||||||||||||||||         ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  26406249 tgctagcttagtgaattccatgattt-tttttttcccttttccttgtcctagtactgcatcgacagcataatcactagcatcacacattatcggtgcaat 26406151  T
Q  314 tactagttgttttttaagattttcaaaggcttctaaacattgttcataaaaatcaaaagacttatctttgctgagtaaattactcaatggctttgtggtt 413  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26406150 tactagttgttttttaagattttcaaatgcttctaaacattcttcataaaaatcaaaagacttatctttgctgagtaaattactcaatggctttgtggtt 26406051  T
Q  414 tttgagaaatccttgaggcatctct 438  Q
    |||||||||||||||| ||||||||    
T  26406050 tttgagaaatccttgatgcatctct 26406026  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 45022934 - 45022985
Alignment:
Q  252 tttctttgtcctagtactgcaccgacagcataatcactagcatcacacatta 303  Q
    |||| ||| |||||||| ||||| ||| ||||||||||||||||||||||||    
T  45022934 tttcgttgacctagtacggcaccaacaacataatcactagcatcacacatta 45022985  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 16844660 - 16844700
Alignment:
Q  261 cctagtactgcaccgacagcataatcactagcatcacacat 301  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  16844660 cctaggactgcaccaacagcataatcacttgcatcacacat 16844700  T

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Target: scaffold0475 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 1573 - 1522
Alignment:
Q  252 tttctttgtcctagtactgcaccgacagcataatcactagcatcacacatta 303  Q
    |||| ||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  1573 tttcgttgacctagtacggcaccaacagcataatcactagcatcacacatta 1522  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 8185961 - 8185910
Alignment:
Q  252 tttctttgtcctagtactgcaccgacagcataatcactagcatcacacatta 303  Q
    |||| ||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  8185961 tttcgttgacctagtacggcaccaacagcataatcactagcatcacacatta 8185910  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 14294772 - 14294823
Alignment:
Q  252 tttctttgtcctagtactgcaccgacagcataatcactagcatcacacatta 303  Q
    |||| ||| |||||||| ||||| ||||||||||| ||||||||||||||||    
T  14294772 tttcgttgacctagtacggcaccaacagcataatcgctagcatcacacatta 14294823  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 8185809 - 8185748
Alignment:
Q  368 aaaagacttatctttgctgagtaaattactcaatggctttgtggtttttgagaaatccttga 429  Q
    |||||||||||||||| |||| ||||| |||||||||||||   | ||||||||||| ||||    
T  8185809 aaaagacttatctttgttgagcaaattgctcaatggctttgctatctttgagaaatctttga 8185748  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 14294924 - 14294985
Alignment:
Q  368 aaaagacttatctttgctgagtaaattactcaatggctttgtggtttttgagaaatccttga 429  Q
    |||||||||||||||| |||| ||||| |||||||||||||   | ||||||||||| ||||    
T  14294924 aaaagacttatctttgttgagcaaattgctcaatggctttgctatctttgagaaatctttga 14294985  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 10854022 - 10854062
Alignment:
Q  368 aaaagacttatctttgctgagtaaattactcaatggctttg 408  Q
    |||||||||||||||| |||| ||||| |||||||||||||    
T  10854022 aaaagacttatctttgttgagcaaatttctcaatggctttg 10854062  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 303
Target Start/End: Complemental strand, 10855330 - 10855298
Alignment:
Q  271 caccgacagcataatcactagcatcacacatta 303  Q
    |||||||| ||||||||||||||||||||||||    
T  10855330 caccgacaacataatcactagcatcacacatta 10855298  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 26141792 - 26141832
Alignment:
Q  261 cctagtactgcaccgacagcataatcactagcatcacacat 301  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  26141792 cctaggactgcaccaacagcataatcacttgcatcacacat 26141832  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 20172973 - 20172899
Alignment:
Q  334 tttcaaaggcttctaaacattgttcataaaaatcaaaagacttatctttgctgagtaaattactcaatggctttg 408  Q
    ||||||| || | |||||||| || || |||||| ||||||||||||||| |||| ||||| |||||||||||||    
T  20172973 tttcaaaagcatttaaacattcttgatcaaaatcgaaagacttatctttgttgagcaaattgctcaatggctttg 20172899  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 34139011 - 34139051
Alignment:
Q  261 cctagtactgcaccgacagcataatcactagcatcacacat 301  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  34139011 cctaggactgcaccaacagcataatcacttgcatcacacat 34139051  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 30638566 - 30638602
Alignment:
Q  366 tcaaaagacttatctttgctgagtaaattactcaatg 402  Q
    |||||||||||||||||| ||||||||||||||||||    
T  30638566 tcaaaagacttatctttgttgagtaaattactcaatg 30638602  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 24439348 - 24439308
Alignment:
Q  261 cctagtactgcaccgacagcataatcactagcatcacacat 301  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  24439348 cctaggactgcaccaacagcataatcacttgcatcacacat 24439308  T

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Target: scaffold0126 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 10082 - 10131
Alignment:
Q  252 tttctttgtcctagtactgcaccgacagcataatcactagcatcacacat 301  Q
    |||| ||| ||||| |||||||| |||||||||||||| |||||||||||    
T  10082 tttcgttggcctaggactgcaccaacagcataatcacttgcatcacacat 10131  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 2452 - 2391
Alignment:
Q  368 aaaagacttatctttgctgagtaaattactcaatggctttgtggtttttgagaaatccttga 429  Q
    |||||||||||||||| |||| ||||| |||||||||||||   | ||||||||||| ||||    
T  2452 aaaagacttatctttgttgagcaaattgctcaatggctttgctatctttgagaaatctttga 2391  T

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Target: scaffold0048 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 15087 - 15047
Alignment:
Q  261 cctagtactgcaccgacagcataatcactagcatcacacat 301  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  15087 cctaggactgcaccaacagcataatcacttgcatcacacat 15047  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 22943921 - 22943881
Alignment:
Q  261 cctagtactgcaccgacagcataatcactagcatcacacat 301  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  22943921 cctaggactgcaccaacagcataatcacttgcatcacacat 22943881  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 23866365 - 23866325
Alignment:
Q  261 cctagtactgcaccgacagcataatcactagcatcacacat 301  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  23866365 cctaggactgcaccaacagcataatcacttgcatcacacat 23866325  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 5892800 - 5892840
Alignment:
Q  261 cctagtactgcaccgacagcataatcactagcatcacacat 301  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  5892800 cctaggactgcaccaacagcataatcacttgcatcacacat 5892840  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 18501392 - 18501432
Alignment:
Q  261 cctagtactgcaccgacagcataatcactagcatcacacat 301  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  18501392 cctaggactgcaccaacagcataatcacttgcatcacacat 18501432  T

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