View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5761_low_15 (Length: 435)

Name: NF5761_low_15
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5761_low_15
NF5761_low_15
[»] chr7 (11 HSPs)
chr7 (17-428)||(8348244-8348659)
chr7 (104-263)||(8364347-8364505)
chr7 (104-315)||(7915429-7915641)
chr7 (324-425)||(8409804-8409904)
chr7 (104-263)||(8442554-8442710)
chr7 (324-380)||(7915315-7915371)
chr7 (35-93)||(8338851-8338910)
chr7 (354-417)||(8442755-8442818)
chr7 (19-93)||(8345595-8345671)
chr7 (292-326)||(8409728-8409762)
chr7 (17-45)||(8345454-8345482)
[»] scaffold0060 (3 HSPs)
scaffold0060 (124-307)||(65260-65443)
scaffold0060 (104-263)||(69243-69399)
scaffold0060 (324-401)||(69161-69238)
[»] scaffold1769 (2 HSPs)
scaffold1769 (104-263)||(322-478)
scaffold1769 (354-401)||(230-277)
[»] chr2 (1 HSPs)
chr2 (214-305)||(24857408-24857499)


Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 428
Target Start/End: Original strand, 8348244 - 8348659
Alignment:
Q  17 atttaatttaattcatggattaatatgttcttttctcacaataaaaattgttctcacttgacatgccctctttaattgtttttatctcttttaacttata 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8348244 atttaatttaatttatggattaatatgttcttttctcacaataaaaattgttctcacttgacataccctctttaattgtttttatctcttttaacttata 8348343  T
Q  117 gaatgccccaaaacaaaattaacctgata--agttgaaattccacatttttgaaagtttattcgtaacctctttcaagtgcattctttcaactgtc--ga 212  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||    
T  8348344 gaatgccccaaaacaaaattaacctgatataagttgaaattccacatttttgaaagtttattcgtaacctctttcaagtgtattctttcaactgtctcga 8348443  T
Q  213 attgtagagttccgaacatgctaaacttcaaaatctcaagaccaactcatatatgccaagttattatcctcactccattagttgttcctgttagggtagc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8348444 attgtagagttccgaacatgctaaacttcaaaatctcaagaccaactcatatatgccaagttattatcctcactccattagttgttcctgttagggtagc 8348543  T
Q  313 catattcattaccaatgctgctaaatttagcatcgctgtagccggtatttgacatcattttgtactaatcagtgtatcacagaccactggcaatttcttc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8348544 catattcattaccaatgctgctaaatttagcatcgctgtagccggtatttgacatcattttgtactaatcagtgtatcacagaccactggcaatttcttc 8348643  T
Q  413 gaattctcctatgcta 428  Q
    ||||||||||||||||    
T  8348644 gaattctcctatgcta 8348659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 104 - 263
Target Start/End: Original strand, 8364347 - 8364505
Alignment:
Q  104 cttttaacttatagaatgccccaaaacaaaattaacctgataagttgaaattccacatttttgaaagtttattcgtaacctctttcaagtgcattctttc 203  Q
    ||||||||||| ||||||| ||| |||||||| ||| |||||||||||| |||||  ||||||||||||||||| |||||||| ||||||| ||||||||    
T  8364347 cttttaacttacagaatgctccataacaaaataaacatgataagttgaagttccag-tttttgaaagtttattcttaacctctatcaagtgtattctttc 8364445  T
Q  204 aactgtcgaattgtagagttccgaacatgctaaacttcaaaatctcaagaccaactcata 263  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  8364446 aactgtcgaattgtagagtgccgaacatgctaaatttcaaaatctcaagaccaactcata 8364505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 104 - 315
Target Start/End: Complemental strand, 7915641 - 7915429
Alignment:
Q  104 cttttaacttatagaatgccccaaaacaaaattaacctgataagttgaaattccacatttttgaaagtttattcgtaacctctttcaagtgcattctttc 203  Q
    |||| ||||||||||||||||||||||| ||||||  ||| |||| |||| ||||| ||||   || ||||||| |||||||| ||||||| || |||||    
T  7915641 ctttaaacttatagaatgccccaaaacataattaatatgaaaagtagaaagtccacttttt---aaatttattcttaacctctatcaagtgtatcctttc 7915545  T
Q  204 aactgtc--gaattgta--gagttccgaacatgctaaacttcaaaatctcaagaccaactcatatatgccaagttattatcctcactccattagttgttc 299  Q
    || ||||  ||||||||  |||| | |||||||||||| |||||||||||||||||||||||||  | ||||||| |||| |||||||||||||||||||    
T  7915544 aattgtcttgaattgtatagagtgcagaacatgctaaatttcaaaatctcaagaccaactcataccttccaagtttttattctcactccattagttgttc 7915445  T
Q  300 ctgttagggtagccat 315  Q
    |||||| |||| ||||    
T  7915444 ctgttaaggtaaccat 7915429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 324 - 425
Target Start/End: Original strand, 8409804 - 8409904
Alignment:
Q  324 ccaatgctgctaaatttagcatcgctgtagccggtatttgacatcattttgtactaatcagtgtatcacagaccactggcaatttcttcgaattctccta 423  Q
    |||||||||||||||||||||||||| ||||||||||||| | || ||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||    
T  8409804 ccaatgctgctaaatttagcatcgctatagccggtatttggcttccttt-gtactaaacagcgtatcacagaccactggcaatttcttcaaattctccta 8409902  T
Q  424 tg 425  Q
    ||    
T  8409903 tg 8409904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 263
Target Start/End: Original strand, 8442554 - 8442710
Alignment:
Q  104 cttttaacttatagaatgccccaaaacaaaattaacctgataagttgaaattccacatttttg-aaagtttattcgtaacctctttcaagtgcattcttt 202  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||   | |||||||||      ||||| ||||||  |||||||    
T  8442554 ctttaaacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccggaaaagtttat------cctctatcaagtctattcttt 8442647  T
Q  203 caactgtc--gaattgtagagttccgaacatgctaaacttcaaaatctcaagaccaactcata 263  Q
    ||||| ||  ||||| |||||| || ||||||||||| |||||||||| ||||||||||||||    
T  8442648 caactatcttgaattctagagtgcctaacatgctaaatttcaaaatctgaagaccaactcata 8442710  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 7915371 - 7915315
Alignment:
Q  324 ccaatgctgctaaatttagcatcgctgtagccggtatttgacatcattttgtactaa 380  Q
    |||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  7915371 ccaatgctgctaaatttagcatcgctatagccggtatttggcatgattttgtactaa 7915315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 8338851 - 8338910
Alignment:
Q  35 attaatatgttcttttctcacaataaaa-attgttctcacttgacatgccctctttaatt 93  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||    
T  8338851 attaatatgttattttctcacaataaaacattgttctcacttgacatgccctatttaatt 8338910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 417
Target Start/End: Original strand, 8442755 - 8442818
Alignment:
Q  354 ccggtatttgacatcattttgtactaatcagtgtatcacagaccactggcaatttcttcgaatt 417  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||  |||||||| ||||    
T  8442755 ccggtatttgacatcattttgtactaaacagtgtatcatagaacactggatatttcttcaaatt 8442818  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 8345595 - 8345671
Alignment:
Q  19 ttaatttaattcatggattaat--atgttcttttctcacaataaaa-attgttctcacttgacatgccctctttaatt 93  Q
    ||||||||||||||| ||||||  ||||| |||||||||||||||| |||||||| |||||||||||||| |||||||    
T  8345595 ttaatttaattcatgcattaattaatgttattttctcacaataaaacattgttct-acttgacatgccctatttaatt 8345671  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 326
Target Start/End: Original strand, 8409728 - 8409762
Alignment:
Q  292 agttgttcctgttagggtagccatattcattacca 326  Q
    ||||||||||||||||||| |||||||||||||||    
T  8409728 agttgttcctgttagggtaaccatattcattacca 8409762  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 8345454 - 8345482
Alignment:
Q  17 atttaatttaattcatggattaatatgtt 45  Q
    |||||||||||||||||||||||||||||    
T  8345454 atttaatttaattcatggattaatatgtt 8345482  T

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Target: scaffold0060 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 124 - 307
Target Start/End: Complemental strand, 65443 - 65260
Alignment:
Q  124 ccaaaacaaaattaacctgataagttgaaattccacatttttgaaagtttattcgtaacctctttcaagtgcattctttcaactgtc--gaattgtagag 221  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||||| |||||||| ||||||  |||||||||||||||   ||||||||||    
T  65443 ccaaaacaaaattaacatgataagttgaaattccag-tttttgaaagtttattcttaacctctatcaagtttattctttcaactgtcttaaattgtagag 65345  T
Q  222 ttccgaacatgctaaacttcaaaatctcaagaccaactcatatatgccaagttattatcctcactccattagttgttcctgttagg 307  Q
    | || ||||||||| | ||||||||||||| |||||||| | | |  |||||| |||  ||||||||||||||||||||| |||||    
T  65344 tgcctaacatgctatatttcaaaatctcaaaaccaactc-tttttttcaagtttttaatctcactccattagttgttcctattagg 65260  T

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Target: scaffold0060; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 104 - 263
Target Start/End: Complemental strand, 69399 - 69243
Alignment:
Q  104 cttttaacttatagaatgccccaaaacaaaattaacctgataagttgaaattccacatttttg-aaagtttattcgtaacctctttcaagtgcattcttt 202  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||   | |||||||||      ||||| ||||||  |||||||    
T  69399 ctttaaacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttccagaaaagtttat------cctctatcaagtctattcttt 69306  T
Q  203 caactgtc--gaattgtagagttccgaacatgctaaacttcaaaatctcaagaccaactcata 263  Q
    ||||| ||  ||||| |||||| || ||||||||||| |||||||||||||||||||||||||    
T  69305 caactatcttgaattctagagtgcctaacatgctaaatttcaaaatctcaagaccaactcata 69243  T

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Target: scaffold0060; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 69238 - 69161
Alignment:
Q  324 ccaatgctgctaaatttagcatcgctgtagccggtatttgacatcattttgtactaatcagtgtatcacagaccactg 401  Q
    ||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  69238 ccaatgctgctaaatttagcatcactataaccggtatttgacatcattttgtactaaacagtgtatcatagaacactg 69161  T

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Target: scaffold1769 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold1769
Description:

Target: scaffold1769; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 104 - 263
Target Start/End: Complemental strand, 478 - 322
Alignment:
Q  104 cttttaacttatagaatgccccaaaacaaaattaacctgataagttgaaattccacatttttg-aaagtttattcgtaacctctttcaagtgcattcttt 202  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||  || |||||||||      ||||| ||||||  |||||||    
T  478 ctttaaacttataggatgccccaaaacaaaattaacatgataagttgaaattccactttcctgaaaagtttat------cctctatcaagtctattcttt 385  T
Q  203 caactgtc--gaattgtagagttccgaacatgctaaacttcaaaatctcaagaccaactcata 263  Q
    ||||| ||  ||||| |||||| || ||||||||||| |||||||||||||||||||||||||    
T  384 caactatcttgaattctagagtgcctaacatgctaaatttcaaaatctcaagaccaactcata 322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1769; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 277 - 230
Alignment:
Q  354 ccggtatttgacatcattttgtactaatcagtgtatcacagaccactg 401  Q
    ||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  277 ccggtatttgacatcattttgtactaaacagtgtatcatagaacactg 230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 24857499 - 24857408
Alignment:
Q  214 ttgtagagttccgaacatgctaaacttcaaaatctcaagaccaactcatatatgccaagttattatcctcactccattagttgttcctgtta 305  Q
    ||||||||| || ||||  ||||  |||||||||| ||||||||||  ||  ||||| ||| |||| |||||||||||||||||||||||||    
T  24857499 ttgtagagtgcctaacagactaattttcaaaatcttaagaccaacttttacctgccatgtttttattctcactccattagttgttcctgtta 24857408  T

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