View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_low_16 (Length: 423)
Name: NF5761_low_16
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 41250713 - 41250586
Alignment:
| Q |
108 |
gatcatgggggatgctatagaatctattgtcgatcatgtgaataattaccagataagcgtggtaaaattgccaaccgagtaataattaaaattaaaaaag |
207 |
Q |
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| T |
41250713 |
gatcatgggggatgctatagaatctattgtcgatcatgtgaataattaccagataagcgtggtaaaattgccaaccgagtaataattaaaattaaaaaag |
41250614 |
T |
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| Q |
208 |
ttttgactttttacatgtattaagacaa |
235 |
Q |
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| T |
41250613 |
ttttgactttttacatgtattaagacaa |
41250586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 41250842 - 41250757
Alignment:
| Q |
11 |
cattatcaggtggtgattaactgacttaaaaccaaggacgaatactaatgaatcttcaagataatgaaaatggtgttatatatata |
96 |
Q |
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| T |
41250842 |
cattatcgggtggtgattaactgacttaaaaccaaggacgaatactaatgaatcttcaagaaaatgaaaatggtgttttatatata |
41250757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 41250527 - 41250471
Alignment:
| Q |
289 |
atcaagccaagactaagaaataaaataaacctgatttccctccttttaaatttaaat |
345 |
Q |
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| T |
41250527 |
atcaaggcaagactaagaaataaaataaacctgatttccctccttttaaatttaaat |
41250471 |
T |
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