View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5761_low_17 (Length: 420)

Name: NF5761_low_17
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5761_low_17
NF5761_low_17
[»] chr3 (5 HSPs)
chr3 (53-416)||(52824040-52824403)
chr3 (18-55)||(48587016-48587053)
chr3 (19-55)||(33644349-33644385)
chr3 (19-48)||(49607563-49607592)
chr3 (19-48)||(53982160-53982189)
[»] chr6 (2 HSPs)
chr6 (19-60)||(32869827-32869868)
chr6 (19-64)||(29857976-29858021)
[»] chr2 (7 HSPs)
chr2 (19-56)||(7465649-7465686)
chr2 (19-53)||(28381572-28381606)
chr2 (19-48)||(5574422-5574451)
chr2 (19-48)||(13438492-13438521)
chr2 (19-48)||(17473169-17473198)
chr2 (19-48)||(28863604-28863633)
chr2 (19-55)||(19930735-19930771)
[»] chr8 (2 HSPs)
chr8 (19-55)||(14548071-14548107)
chr8 (24-63)||(34012203-34012242)
[»] chr7 (4 HSPs)
chr7 (19-55)||(19329991-19330027)
chr7 (19-53)||(8080300-8080334)
chr7 (19-48)||(3434701-3434730)
chr7 (19-55)||(38837366-38837402)
[»] chr5 (5 HSPs)
chr5 (19-62)||(2740423-2740467)
chr5 (24-63)||(33149545-33149584)
chr5 (19-57)||(14831963-14832001)
chr5 (18-55)||(40145555-40145592)
chr5 (19-55)||(16115247-16115283)
[»] chr4 (3 HSPs)
chr4 (19-53)||(24995024-24995058)
chr4 (19-53)||(41236496-41236530)
chr4 (19-55)||(42044282-42044318)
[»] chr1 (4 HSPs)
chr1 (19-53)||(26274578-26274612)
chr1 (19-53)||(27564652-27564686)
chr1 (19-48)||(37649347-37649376)
chr1 (19-48)||(48716204-48716233)
[»] scaffold0237 (1 HSPs)
scaffold0237 (19-55)||(4178-4214)


Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 53 - 416
Target Start/End: Original strand, 52824040 - 52824403
Alignment:
Q  53 tttgtttattgtcaggaagatagagcgattgtgtgcaaagagtgtgatttgaaggttcatggtgtcaacgaacacaccaagaagcataataggtttcttc 152  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52824040 tttgttttttgtcaggaagatagagcgattgtgtgcaaagagtgtgatttgaaggttcacggtgtcaacgaacacaccaagaagcataataggtttcttc 52824139  T
Q  153 taagtgggatcaagctgcactctcctgctcctcctcccactcttcatgaagaaactggtaattttactatatctgagtacttgataaacactatcccagg 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52824140 taagtgggatcaagctgcactctcctgctcctcctcccactcttcatgaagaaactggtaattttactatatctgagtacttgataaacactatcccagg 52824239  T
Q  253 ttggaagtttgaagatttccttgattccccttcttcttctgttccctctcatgaactacaacaccagaatcatatagtgcatgatgatgctaattatcat 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52824240 ttggaagtttgaagatttccttgattccccttcttcttctgttccctctcatgaactacaacaccagaatcatatagtgcatgatgatgctaattatcat 52824339  T
Q  353 attcatgaggaaaatattctggtttctttctctagcgagagcatgcgtaggatctgtgctcctc 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52824340 attcatgaggaaaatattctggtttctttctctagcgagagcatgcgtaggatctgtgttcctc 52824403  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 48587053 - 48587016
Alignment:
Q  18 atatgggaataaagggtgtctatgtatcattcctcttt 55  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  48587053 atatgggaataaagggtgtctatgtatcattactcttt 48587016  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 33644349 - 33644385
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctcttt 55  Q
    |||||||||||||||||||||||||||||| ||||||    
T  33644349 tatgggaataaagggtgtctatgtatcattactcttt 33644385  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 49607563 - 49607592
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcatt 48  Q
    ||||||||||||||||||||||||||||||    
T  49607563 tatgggaataaagggtgtctatgtatcatt 49607592  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 53982160 - 53982189
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcatt 48  Q
    ||||||||||||||||||||||||||||||    
T  53982160 tatgggaataaagggtgtctatgtatcatt 53982189  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 32869827 - 32869868
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctctttgttta 60  Q
    |||||||||||||||||||||||||||||| |||||| ||||    
T  32869827 tatgggaataaagggtgtctatgtatcattactcttttttta 32869868  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 29857976 - 29858021
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctctttgtttattgt 64  Q
    |||||||||||| ||||||||||||||||| |||||| ||| ||||    
T  29857976 tatgggaataaatggtgtctatgtatcattactcttttttttttgt 29858021  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 7465686 - 7465649
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctctttg 56  Q
    |||||||||||||||||||||||||||||| |||||||    
T  7465686 tatgggaataaagggtgtctatgtatcattactctttg 7465649  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 28381606 - 28381572
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctct 53  Q
    |||||||||||||||||||||||||||||| ||||    
T  28381606 tatgggaataaagggtgtctatgtatcattactct 28381572  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 5574451 - 5574422
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcatt 48  Q
    ||||||||||||||||||||||||||||||    
T  5574451 tatgggaataaagggtgtctatgtatcatt 5574422  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 13438492 - 13438521
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcatt 48  Q
    ||||||||||||||||||||||||||||||    
T  13438492 tatgggaataaagggtgtctatgtatcatt 13438521  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 17473169 - 17473198
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcatt 48  Q
    ||||||||||||||||||||||||||||||    
T  17473169 tatgggaataaagggtgtctatgtatcatt 17473198  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 28863604 - 28863633
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcatt 48  Q
    ||||||||||||||||||||||||||||||    
T  28863604 tatgggaataaagggtgtctatgtatcatt 28863633  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 19930771 - 19930735
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctcttt 55  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  19930771 tatgggaataaaaggtgtctatgtatcattactcttt 19930735  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 14548071 - 14548107
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctcttt 55  Q
    |||||||||||||||||||||||||||||| ||||||    
T  14548071 tatgggaataaagggtgtctatgtatcattactcttt 14548107  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 34012242 - 34012203
Alignment:
Q  24 gaataaagggtgtctatgtatcattcctctttgtttattg 63  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  34012242 gaataaagggtgtctatgtatcattactctttttttattg 34012203  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 19329991 - 19330027
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctcttt 55  Q
    |||||||||||||||||||||||||||||| ||||||    
T  19329991 tatgggaataaagggtgtctatgtatcattactcttt 19330027  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 8080334 - 8080300
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctct 53  Q
    |||||||||||||||||||||||||||||| ||||    
T  8080334 tatgggaataaagggtgtctatgtatcattactct 8080300  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 3434701 - 3434730
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcatt 48  Q
    ||||||||||||||||||||||||||||||    
T  3434701 tatgggaataaagggtgtctatgtatcatt 3434730  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 38837366 - 38837402
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctcttt 55  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  38837366 tatggaaataaagggtgtctatgtatcattactcttt 38837402  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 2740423 - 2740467
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctctt-tgtttatt 62  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||    
T  2740423 tatgggaataaagggtgtctatgtatcattactcttctgtttatt 2740467  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 33149584 - 33149545
Alignment:
Q  24 gaataaagggtgtctatgtatcattcctctttgtttattg 63  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  33149584 gaataaagggtgtctatgtatcattactctttttttattg 33149545  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 14831963 - 14832001
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctctttgt 57  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  14831963 tatgggaataaagggtgtctatgtatcattactcgttgt 14832001  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 40145555 - 40145592
Alignment:
Q  18 atatgggaataaagggtgtctatgtatcattcctcttt 55  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  40145555 atatgagaataaagggtgtctatgtatcattactcttt 40145592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 16115283 - 16115247
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctcttt 55  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  16115283 tatgagaataaagggtgtctatgtatcattactcttt 16115247  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 24995058 - 24995024
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctct 53  Q
    |||||||||||||||||||||||||||||| ||||    
T  24995058 tatgggaataaagggtgtctatgtatcattactct 24995024  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 41236496 - 41236530
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctct 53  Q
    |||||||||||||||||||||||||||||| ||||    
T  41236496 tatgggaataaagggtgtctatgtatcattactct 41236530  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 42044318 - 42044282
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctcttt 55  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  42044318 tatggaaataaagggtgtctatgtatcattactcttt 42044282  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 26274578 - 26274612
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctct 53  Q
    |||||||||||||||||||||||||||||| ||||    
T  26274578 tatgggaataaagggtgtctatgtatcattactct 26274612  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 27564686 - 27564652
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctct 53  Q
    |||||||||||||||||||||||||||||| ||||    
T  27564686 tatgggaataaagggtgtctatgtatcattactct 27564652  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 37649347 - 37649376
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcatt 48  Q
    ||||||||||||||||||||||||||||||    
T  37649347 tatgggaataaagggtgtctatgtatcatt 37649376  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 48716233 - 48716204
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcatt 48  Q
    ||||||||||||||||||||||||||||||    
T  48716233 tatgggaataaagggtgtctatgtatcatt 48716204  T

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Target: scaffold0237 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 4178 - 4214
Alignment:
Q  19 tatgggaataaagggtgtctatgtatcattcctcttt 55  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  4178 tatgggaataaatggtgtctatgtatcattactcttt 4214  T

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