View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_low_2 (Length: 608)
Name: NF5761_low_2
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 15302056 - 15301660
Alignment:
| Q |
1 |
tgatgcatttattatgatttgtggattaatattgtgtcactcataataatgtcgtaatgttctagtgatttgagttgttagtgattttgtttggtgttga |
100 |
Q |
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| T |
15302056 |
tgatgcatttattatgatttgtgtattaatattgtgtcactcataataatgtcgtaatgttctaacgataggagttgtttgtgattttgtttggtgttga |
15301957 |
T |
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| Q |
101 |
ctgctgaatatttttaacctatttctacctacgacgatatagttgtagttgtgtgatttaagttgttagtggtgctatatggtattgtattgggtgtgtt |
200 |
Q |
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| T |
15301956 |
ctgctgagtatttttaacctatttctacct---acgatatagttgtagttgtgtgatttaagttgttagtggtgctatatggtgttgtgctgggtttgtt |
15301860 |
T |
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| Q |
201 |
tcatctatttgtatgtaacatgtaatttatttatgatgtactcacctcttctatgtctgtttctctgtttgtactgttgtaacatgtacaggggtgcttt |
300 |
Q |
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| T |
15301859 |
tcatttatttgtacgtaacatgtaatttatttatgatgcactcacctcttatatg--------tctgtttgtactgttgtaacatgtaaaggggtgcttt |
15301768 |
T |
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| Q |
301 |
aatcagtcgccgaggaatgatcatctgttagagaaccagcttgtggacatcttggtgttacttcaataactttagtatagtctagaattttatgggaatt |
400 |
Q |
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| T |
15301767 |
aatcagtcgccgaggaatgatcatcagttagagaaccagcttgtggacatcttggtgttacttcaataactttagtatagtctggaattttatgggaa-t |
15301669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 178 - 417
Target Start/End: Complemental strand, 15294695 - 15294456
Alignment:
| Q |
178 |
tatggtattgtattgggtgtgtttcatctatttgtatgtaacatgtaatttatttatgatgtactcacctcttctatgtctgtttctctgtttgtactgt |
277 |
Q |
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| T |
15294695 |
tatggtgttgtattgggtttgtttcatctatttgtacgtaacatgtaatttatttatgatgtactaacctcttctatgtctgtttctctgtttgtactgt |
15294596 |
T |
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| Q |
278 |
tgtaacatgtacaggggtgctttaatcagtcgccgaggaatgatcatctgttagagaaccagcttgtggacatcttggtgttacttcaataactttagta |
377 |
Q |
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| T |
15294595 |
tgtaacatgtacaggggtgctttaatcagccgccgaggaatgatcatcagttagagaaccagcttgtggacatcttggtgttactccaattactttctta |
15294496 |
T |
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| Q |
378 |
tagtctagaattttatgggaatttcaagctgtgtatttta |
417 |
Q |
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| T |
15294495 |
taggctggaattttatgtgaatttcaagctgtgtatttta |
15294456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 40693841 - 40693746
Alignment:
| Q |
266 |
tgtttgtactgttgtaacatgtacaggggtgctttaatcagtcgccgaggaatgatcatctgttagagaaccagcttgtggacatc-ttggtgttact |
362 |
Q |
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| T |
40693841 |
tgtttgtacacttgtaacatgtacaggggagctttcataagtcgtcgtggaa--atgatcggtttgagaaccagcttgtggacaactttggtgttact |
40693746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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