View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_low_20 (Length: 391)
Name: NF5761_low_20
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 49406521 - 49406145
Alignment:
| Q |
1 |
tttcttccctaaaagattagatcacacaatacagaacatgaaggaaagtgcaagaatttttcatcacacgaagcataacggccaaataccaacaggatgt |
100 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49406521 |
tttcttccctaaaagattagatcccacaatatagaacatgaaggaaattgcaagaatttttcatcacacgaagcataacggccaaataccaacaggatgt |
49406422 |
T |
|
| Q |
101 |
agtcctcaccagtacttggttcatcatgaatctaaaattattatttaaatctatgcaattgaatatcaaacagagtaagatacttttgactgagatatat |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49406421 |
agtccacaccagtacttggttcatcatgaatctaaaattattatttaaatctatgcaattgaatatcaaacagagtaagatacttt----tgagatatat |
49406326 |
T |
|
| Q |
201 |
cacacatctttgcacatttggggaaaatggttaaagaggtttaagttcctgctcagcgctcacaaaggcgttatgtgatttgcaatgcagcggctcttat |
300 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49406325 |
cacacatctttgcacatttgggggaaatggttaaagaggtttaagttcctgctcagcgctcacaaaggcgttatgtgatttgcaatgcagcggctctcat |
49406226 |
T |
|
| Q |
301 |
atactagcattctcataccgtgatcacggggtgtttttgcataattttcttgatggattatgggttccaatggcttctgtg |
381 |
Q |
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| T |
49406225 |
atacaagcattctcataccgtggccacggggtgtttttgcataatgttcttgacggattatgggttccaatggcttctgtg |
49406145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 52269945 - 52270311
Alignment:
| Q |
1 |
tttcttccctaaaagattagatcacacaatacagaacatgaaggaaagtgcaagaattttt-catcacacgaagcataacggccaaataccaacaggatg |
99 |
Q |
| |
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||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||| | |
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| T |
52269945 |
tttcttccctaaaaggttagatcccacaatacaaaacatgaaggaaattgcaagaattttttcatcacaggaagcataacggccaaataccaataggaag |
52270044 |
T |
|
| Q |
100 |
tagtcctc---accagtacttggttcat---catgaatctaaaattattatttaaatctatgcaattgaatatcaaacagagtaagatacttt-tgactg |
192 |
Q |
| |
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|||||| | |||| |||||||||||| |||||||||||||||||||||||||| | || ||||||||| ||| |||||||||||||||| | || |
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| T |
52270045 |
tagtccactacaccactacttggttcatcatcatgaatctaaaattattatttaaatttgtgtaattgaataccaagcagagtaagatactttgagtttg |
52270144 |
T |
|
| Q |
193 |
agatatatcacacatctttgcacatttggggaaaatggttaaagaggtttaagttcctgctcagcgctcacaaaggcgttatgtgatttgcaatgcagcg |
292 |
Q |
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||| |||| || |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
52270145 |
agaaatatgac-----------catttggggaaaatggctaaagaggtttaagttcctgctcagtgctcacaaaggcgttatgtgatttgcaacatagca |
52270233 |
T |
|
| Q |
293 |
gctcttatatactagcattctcataccgtgatcacggggtgtttttgcataattttcttgatggattatgggttccaatggct |
375 |
Q |
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| ||||||||| ||||||||||| || |||| |||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
52270234 |
g-----atatactagaattctcataccatggccacgtggtgtttttgcataatgttcaggatggattatgggttccaatggct |
52270311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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