View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5761_low_27 (Length: 308)
Name: NF5761_low_27
Description: NF5761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5761_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 10334598 - 10334740
Alignment:
| Q |
9 |
gattatactcatctacaagtctcttgagagccaatcttgacggggcattgaccaagccccgcacatcccaaaataggcacttcatctaaaaggtttaaca |
108 |
Q |
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| T |
10334598 |
gattatactcatctacaagtctcttgagagccaatcttgacggggcattgaccaagccccgcacatcccaaaataggcacttcatctaaaaggtttaaca |
10334697 |
T |
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| Q |
109 |
ttaataacctttgtcattgtttcatatttcttgcttattggtg |
151 |
Q |
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| T |
10334698 |
ttaataacctttgttattgtttcatatttcttgcttattggtg |
10334740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 10334762 - 10334803
Alignment:
| Q |
171 |
gactcttcttcatggcctttgaagaaatcccaaaatagccaat |
213 |
Q |
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| T |
10334762 |
gactcttcttcatggc-tttgaagaaatcccaaaatagccaat |
10334803 |
T |
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